1 HAMP#1
123-192 aa · 70 aa · 16.4% of protein
Raw token
HAMP:123:0.0000512:192:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LLJ07_RS07220
Histidine kinase, Classic
Bifidobacterium bifidum · GCF_020861855
ClassHKTypeClassicLength428 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020861855#LLJ07_RS07220Stable P2CS identifier used across views.
GenomeGCF_020861855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length428 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 428 aa (59.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa428 aa
Domain-by-domain annotation3 items
2 HisKA#2
200-262 aa · 63 aa · 14.7% of protein
Raw token
HisKA:200:0.0000000154:262:63:643 HATPase_c#3
305-427 aa · 123 aa · 28.7% of protein
Raw token
HATPase_c:305:7.49e-19:427:123:109- Raw architecture: HAMP:123:0.0000512:192:70:69#HisKA:200:0.0000000154:262:63:64#HATPase_c:305:7.49e-19:427:123:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020861855::NZ_JAJHZI010000002.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span209435-211374Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLLJ07_07205RefSeq proteinWP_061871013.1
Context group ID
GCF_020861855::NZ_JAJHZI010000002.1::G00014Context members
LLJ07_RS07220LLJ07_RS07225
Partner locus tags
LLJ07_RS07220LLJ07_RS07225
Partner old locus tags
LLJ07_07205LLJ07_07210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_061871013.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLLJ07_RS07220Primary locus identifier stored in the genes table.
Old locus tagLLJ07_07205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJHZI010000002.1Sequence record reported by the local genomic context database.
Genomic interval209 435-210 721 nt1 287 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span209 435-211 374 ntGCF_020861855::NZ_JAJHZI010000002.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020861855::NZ_JAJHZI010000002.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJHZI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span209 435-211 374 nt1 940 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
209 435 nt211 374 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LLJ07_RS07220GCF_020861855#LLJ07_RS07220
HKClassicCurrent focus
209 435-210 721 nt · Reverse (-)
LLJ07_RS07225GCF_020861855#LLJ07_RS07225
RROmpR
210 718-211 374 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001595435#APS66_RS07495Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2190330
Simplified PFAM architecture for HKOC_2190330
PFAM domain coverage: 185 / 428 aa (43.2%)
1 aa428 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[199-262] | HATPase_c[306-426]
- Domain count: 2
- Matched identifier: HKOC_2190330
- Positioned domains: HisKA 199-262 ; HATPase_c 306-426
Cluster members and taxonomy
Representative gene: GCF_001595435#APS66_RS07495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_020861855
AssemblyASM2086185v1 · Contighaploid
Genome composition2 288 004 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key