1 HisKA_3#1
238-323 aa · 86 aa · 18.0% of protein
Raw token
HisKA_3:238:0.00000525:323:86:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LLJ07_RS05960
Histidine kinase, Classic
Bifidobacterium bifidum · GCF_020861855
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020861855#LLJ07_RS05960Stable P2CS identifier used across views.
GenomeGCF_020861855Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 479 aa (36.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
377-466 aa · 90 aa · 18.8% of protein
Raw token
HATPase_c:377:0.0000121:466:104:109- Raw architecture: HisKA_3:238:0.00000525:323:86:68#HATPase_c:377:0.0000121:466:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020861855::NZ_JAJHZI010000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1407380-1409487Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLLJ07_05945RefSeq proteinWP_061870446.1
Context group ID
GCF_020861855::NZ_JAJHZI010000001.1::G00010Context members
LLJ07_RS05960LLJ07_RS05965
Partner locus tags
LLJ07_RS05960LLJ07_RS05965
Partner old locus tags
LLJ07_05945LLJ07_05950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_061870446.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLLJ07_RS05960Primary locus identifier stored in the genes table.
Old locus tagLLJ07_05945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJHZI010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 407 380-1 408 819 nt1 440 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 407 380-1 409 487 ntGCF_020861855::NZ_JAJHZI010000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020861855::NZ_JAJHZI010000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJHZI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 407 380-1 409 487 nt2 108 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 407 380 nt1 409 487 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LLJ07_RS05960GCF_020861855#LLJ07_RS05960
HKClassicCurrent focus
1 407 380-1 408 819 nt · Forward (+)
LLJ07_RS05965GCF_020861855#LLJ07_RS05965
RRNarL
1 408 816-1 409 487 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001595435#APS66_RS00330Use this link to inspect the representative gene detail.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for HKOC_1629330
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_001595435#APS66_RS00330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 681 · GCF_020861855
AssemblyASM2086185v1 · Contighaploid
Genome composition2 288 004 bp · 62,5% GCBifidobacterium bifidum
Signal transduction countsGenes 30 · HK 13 · RR 16CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key