1 HAMP#1
164-231 aa · 68 aa · 14.1% of protein
Raw token
HAMP:164:0.00000000000128:231:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK486_RS01030
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020708865
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708865#LK486_RS01030Stable P2CS identifier used across views.
GenomeGCF_020708865Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 483 aa (50.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HisKA#2
256-320 aa · 65 aa · 13.5% of protein
Raw token
HisKA:256:0.0000000022:320:65:643 HATPase_c#3
366-477 aa · 112 aa · 23.2% of protein
Raw token
HATPase_c:366:1.54e-26:477:113:109- Raw architecture: HAMP:164:0.00000000000128:231:68:69#HisKA:256:0.0000000022:320:65:64#HATPase_c:366:1.54e-26:477:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708865::NZ_JAJFCD010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span176395-178495Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK486_01030RefSeq proteinWP_173815158.1
Context group ID
GCF_020708865::NZ_JAJFCD010000001.1::G00004Context members
LK486_RS01030LK486_RS01035
Partner locus tags
LK486_RS01030LK486_RS01035
Partner old locus tags
LK486_01030LK486_01035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815158.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK486_RS01030Primary locus identifier stored in the genes table.
Old locus tagLK486_01030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCD010000001.1Sequence record reported by the local genomic context database.
Genomic interval176 395-177 846 nt1 452 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span176 395-178 495 ntGCF_020708865::NZ_JAJFCD010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708865::NZ_JAJFCD010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCD010000001.1All displayed genes belong to this local TCS context.
Neighborhood span176 395-178 495 nt2 101 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 395 nt178 495 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK486_RS01030GCF_020708865#LK486_RS01030
HKClassicCurrent focus
176 395-177 846 nt · Reverse (-)
LK486_RS01035GCF_020708865#LK486_RS01035
RROmpR
177 830-178 495 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS03250Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1596893
Simplified PFAM architecture for HKOC_1596893
PFAM domain coverage: 224 / 483 aa (46.4%)
1 aa483 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[180-230] | HisKA[257-320] | HATPase_c[367-475]
- Domain count: 3
- Matched identifier: HKOC_1596893
- Positioned domains: HAMP 180-230 ; HisKA 257-320 ; HATPase_c 367-475
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS03250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020708865
AssemblyASM2070886v1 · Contighaploid
Genome composition3 763 268 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 50CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key