1 PAS_3#1
40-121 aa · 82 aa · 8.4% of protein
Raw token
PAS_3:40:7.83e-16:121:87:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK490_RS15575
Histidine kinase, Hybrid
Blautia sp. MSK22_86 · GCF_020708755
ClassHKTypeHybridLength973 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_020708755#LK490_RS15575Stable P2CS identifier used across views.
GenomeGCF_020708755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length973 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage467 / 973 aa (48.0%)Merged over positioned domains only.
Domain description2 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa973 aa
Domain-by-domain annotation5 items
2 PAS_3#2
170-257 aa · 88 aa · 9.0% of protein
Raw token
PAS_3:170:0.00000000000777:257:91:893 HisKA#3
576-641 aa · 66 aa · 6.8% of protein
Raw token
HisKA:576:2.55e-18:641:66:644 HATPase_c#4
688-801 aa · 114 aa · 11.7% of protein
Raw token
HATPase_c:688:5.49e-29:801:114:1095 Response_reg#5
832-948 aa · 117 aa · 12.0% of protein
Raw token
Response_reg:832:2.13e-30:948:117:111- Raw architecture: PAS_3:40:7.83e-16:121:87:89#PAS_3:170:0.00000000000777:257:91:89#HisKA:576:2.55e-18:641:66:64#HATPase_c:688:5.49e-29:801:114:109#Response_reg:832:2.13e-30:948:117:111
- Domain description: 2 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_020708755::NZ_JAJFCP010000020.1::G00027
Group size44 locus tags listed below.
HK / RR4 / 0Counts resolved for the local TCS neighborhood.
Context span24533-35783Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK490_15570RefSeq proteinWP_173754459.1
Context group ID
GCF_020708755::NZ_JAJFCP010000020.1::G00027Context members
LK490_RS15570LK490_RS15575LK490_RS15580LK490_RS15585
Partner locus tags
LK490_RS15570LK490_RS15575LK490_RS15580LK490_RS15585
Partner old locus tags
LK490_15565LK490_15570LK490_15575LK490_15580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173754459.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK490_RS15575Primary locus identifier stored in the genes table.
Old locus tagLK490_15570Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCP010000020.1Sequence record reported by the local genomic context database.
Genomic interval27 423-30 344 nt2 922 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 533-35 783 ntGCF_020708755::NZ_JAJFCP010000020.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708755::NZ_JAJFCP010000020.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCP010000020.1All displayed genes belong to this local TCS context.
Neighborhood span24 533-35 783 nt11 251 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 533 nt35 783 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
LK490_RS15570GCF_020708755#LK490_RS15570
HKHybrid
24 533-27 364 nt · Reverse (-)
LK490_RS15575GCF_020708755#LK490_RS15575
HKHybridCurrent focus
27 423-30 344 nt · Reverse (-)
LK490_RS15580GCF_020708755#LK490_RS15580
HKHybrid
30 662-33 577 nt · Reverse (-)
LK490_RS15585GCF_020708755#LK490_RS15585
HKHybrid
33 633-35 783 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301805#G5A92_RS15755Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0310254
Simplified PFAM architecture for HKOC_0310254
PFAM domain coverage: 468 / 973 aa (48.1%)
1 aa973 aa
PAS_3PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[40-123] | PAS_3[170-257] | HisKA[576-641] | HATPase_c[688-801] | Response_reg[832-947]
- Domain count: 5
- Matched identifier: HKOC_0310254
- Positioned domains: PAS_3 40-123 ; PAS_3 170-257 ; HisKA 576-641 ; HATPase_c 688-801 ; Response_reg 832-947
Cluster members and taxonomy
Representative gene: GCF_013301805#G5A92_RS15755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 884 906 · GCF_020708755
AssemblyASM2070875v1 · Contighaploid
Genome composition4 084 876 bp · 44,5% GCBlautia sp. MSK22_86
Signal transduction countsGenes 107 · HK 47 · RR 55CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key