1 Response_reg#1
6-114 aa · 109 aa · 20.6% of protein
Raw token
Response_reg:6:7.86e-29:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK490_RS13880
Response regulator, unclassified
Blautia sp. MSK22_86 · GCF_020708755
ClassRRTypeunclassifiedLength529 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708755#LK490_RS13880Stable P2CS identifier used across views.
GenomeGCF_020708755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length529 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage143 / 529 aa (27.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa529 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
439-472 aa · 34 aa · 6.4% of protein
Raw token
HTH_AraC:439:0.0000000126:472:34:42- Raw architecture: Response_reg:6:7.86e-29:114:109:111#HTH_AraC:439:0.0000000126:472:34:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708755::NZ_JAJFCP010000014.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79846-83194Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK490_13880RefSeq proteinWP_173754059.1
Context group ID
GCF_020708755::NZ_JAJFCP010000014.1::G00019Context members
LK490_RS13880LK490_RS13885
Partner locus tags
LK490_RS13880LK490_RS13885
Partner old locus tags
LK490_13880LK490_13885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173754059.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK490_RS13880Primary locus identifier stored in the genes table.
Old locus tagLK490_13880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCP010000014.1Sequence record reported by the local genomic context database.
Genomic interval79 846-81 435 nt1 590 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 846-83 194 ntGCF_020708755::NZ_JAJFCP010000014.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708755::NZ_JAJFCP010000014.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCP010000014.1All displayed genes belong to this local TCS context.
Neighborhood span79 846-83 194 nt3 349 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 846 nt83 194 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK490_RS13880GCF_020708755#LK490_RS13880
RRunclassifiedCurrent focus
79 846-81 435 nt · Forward (+)
LK490_RS13885GCF_020708755#LK490_RS13885
HKClassic
81 464-83 194 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301805#G5A92_RS10990Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0113454
Simplified PFAM architecture for RROC_0113454
PFAM domain coverage: 313 / 529 aa (59.2%)
1 aa529 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-116] | GGDEF_2[164-287] | HTH_18[446-523]
- Domain count: 3
- Matched identifier: RROC_0113454
- Positioned domains: Response_reg 6-116 ; GGDEF_2 164-287 ; HTH_18 446-523
Cluster members and taxonomy
Representative gene: GCF_013301805#G5A92_RS10990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 884 906 · GCF_020708755
AssemblyASM2070875v1 · Contighaploid
Genome composition4 084 876 bp · 44,5% GCBlautia sp. MSK22_86
Signal transduction countsGenes 107 · HK 47 · RR 55CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key