1 dCache_1#1
46-286 aa · 241 aa · 40.5% of protein
Raw token
dCache_1:46:1.03e-22:286:246:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK490_RS08930
Histidine kinase, Classic
Blautia sp. MSK22_86 · GCF_020708755
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708755#LK490_RS08930Stable P2CS identifier used across views.
GenomeGCF_020708755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage500 / 595 aa (84.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation4 items
2 HAMP#2
305-374 aa · 70 aa · 11.8% of protein
Raw token
HAMP:305:0.0000000000000132:374:70:693 His_kinase#3
389-468 aa · 80 aa · 13.4% of protein
Raw token
His_kinase:389:7.29e-34:468:80:804 HATPase_c#4
480-588 aa · 109 aa · 18.3% of protein
Raw token
HATPase_c:480:0.00000000000000428:588:113:109- Raw architecture: dCache_1:46:1.03e-22:286:246:195#HAMP:305:0.0000000000000132:374:70:69#His_kinase:389:7.29e-34:468:80:80#HATPase_c:480:0.00000000000000428:588:113:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708755::NZ_JAJFCP010000006.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84279-87679Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK490_08925RefSeq proteinWP_173753724.1
Context group ID
GCF_020708755::NZ_JAJFCP010000006.1::G00054Context members
LK490_RS08930LK490_RS08935
Partner locus tags
LK490_RS08930LK490_RS08935
Partner old locus tags
LK490_08925LK490_08930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173753724.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK490_RS08930Primary locus identifier stored in the genes table.
Old locus tagLK490_08925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCP010000006.1Sequence record reported by the local genomic context database.
Genomic interval84 279-86 066 nt1 788 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span84 279-87 679 ntGCF_020708755::NZ_JAJFCP010000006.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708755::NZ_JAJFCP010000006.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCP010000006.1All displayed genes belong to this local TCS context.
Neighborhood span84 279-87 679 nt3 401 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 279 nt87 679 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK490_RS08930GCF_020708755#LK490_RS08930
HKClassicCurrent focus
84 279-86 066 nt · Reverse (-)
LK490_RS08935GCF_020708755#LK490_RS08935
RRunclassified
86 063-87 679 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301805#G5A92_RS07570Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1082865
Simplified PFAM architecture for HKOC_1082865
PFAM domain coverage: 471 / 595 aa (79.2%)
1 aa595 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[55-286] | HAMP[321-374] | His_kinase[389-468] | HATPase_c[484-588]
- Domain count: 4
- Matched identifier: HKOC_1082865
- Positioned domains: dCache_1 55-286 ; HAMP 321-374 ; His_kinase 389-468 ; HATPase_c 484-588
Cluster members and taxonomy
Representative gene: GCF_013301805#G5A92_RS07570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 884 906 · GCF_020708755
AssemblyASM2070875v1 · Contighaploid
Genome composition4 084 876 bp · 44,5% GCBlautia sp. MSK22_86
Signal transduction countsGenes 107 · HK 47 · RR 55CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key