1 Response_reg#1
6-113 aa · 108 aa · 43.9% of protein
Raw token
Response_reg:6:0.00000000000000189:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK490_RS07620
Response regulator LytTR family
Blautia sp. MSK22_86 · GCF_020708755
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020708755#LK490_RS07620Stable P2CS identifier used across views.
GenomeGCF_020708755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage192 / 246 aa (78.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-222 aa · 84 aa · 34.1% of protein
Raw token
LytTR:139:8.99e-17:222:90:98- Raw architecture: Response_reg:6:0.00000000000000189:113:110:111#LytTR:139:8.99e-17:222:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020708755::NZ_JAJFCP010000005.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span57072-57812Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK490_07615RefSeq proteinWP_138277143.1
Context group ID
GCF_020708755::NZ_JAJFCP010000005.1::G00043Context members
LK490_RS07620
Partner locus tags
LK490_RS07620
Partner old locus tags
LK490_07615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_138277143.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK490_RS07620Primary locus identifier stored in the genes table.
Old locus tagLK490_07615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCP010000005.1Sequence record reported by the local genomic context database.
Genomic interval57 072-57 812 nt741 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span57 072-57 812 ntGCF_020708755::NZ_JAJFCP010000005.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708755::NZ_JAJFCP010000005.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCP010000005.1All displayed genes belong to this local TCS context.
Neighborhood span57 072-57 812 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 072 nt57 812 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LK490_RS07620GCF_020708755#LK490_RS07620
RRLytTRCurrent focus
57 072-57 812 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005848555#EYS05_RS10740Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0775440
Simplified PFAM architecture for RROC_0775440
PFAM domain coverage: 196 / 246 aa (79.7%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-114] | LytTR[140-226]
- Domain count: 2
- Matched identifier: RROC_0775440
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; LytTR 140-226 ; LytTR 140-226
Cluster members and taxonomy
Representative gene: GCF_005848555#EYS05_RS10740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 884 906 · GCF_020708755
AssemblyASM2070875v1 · Contighaploid
Genome composition4 084 876 bp · 44,5% GCBlautia sp. MSK22_86
Signal transduction countsGenes 107 · HK 47 · RR 55CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key