1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:3.3e-28:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK490_RS07235
Response regulator OmpR family
Blautia sp. MSK22_86 · GCF_020708755
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708755#LK490_RS07235Stable P2CS identifier used across views.
GenomeGCF_020708755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 225 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-218 aa · 72 aa · 32.0% of protein
Raw token
Trans_reg_C:147:5.2e-23:218:76:77- Raw architecture: Response_reg:5:3.3e-28:114:110:111#Trans_reg_C:147:5.2e-23:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708755::NZ_JAJFCP010000004.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219707-221276Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK490_07230RefSeq proteinWP_173753661.1
Context group ID
GCF_020708755::NZ_JAJFCP010000004.1::G00039Context members
LK490_RS07230LK490_RS07235
Partner locus tags
LK490_RS07230LK490_RS07235
Partner old locus tags
LK490_07225LK490_07230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173753661.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1AQQ0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1AQQ0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK490_RS07235Primary locus identifier stored in the genes table.
Old locus tagLK490_07230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCP010000004.1Sequence record reported by the local genomic context database.
Genomic interval220 599-221 276 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span219 707-221 276 ntGCF_020708755::NZ_JAJFCP010000004.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708755::NZ_JAJFCP010000004.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCP010000004.1All displayed genes belong to this local TCS context.
Neighborhood span219 707-221 276 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 707 nt221 276 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK490_RS07230GCF_020708755#LK490_RS07230
HKClassic
219 707-220 378 nt · Reverse (-)
LK490_RS07235GCF_020708755#LK490_RS07235
RROmpRCurrent focus
220 599-221 276 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301805#G5A92_RS07065Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1488351
Simplified PFAM architecture for RROC_1488351
PFAM domain coverage: 181 / 225 aa (80.4%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1488351
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_013301805#G5A92_RS07065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 884 906 · GCF_020708755
AssemblyASM2070875v1 · Contighaploid
Genome composition4 084 876 bp · 44,5% GCBlautia sp. MSK22_86
Signal transduction countsGenes 107 · HK 47 · RR 55CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key