1 HisKA#1
11-72 aa · 62 aa · 27.8% of protein
Raw token
HisKA:11:0.00000000000448:72:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK490_RS07230
Histidine kinase, Classic
Blautia sp. MSK22_86 · GCF_020708755
ClassHKTypeClassicLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708755#LK490_RS07230Stable P2CS identifier used across views.
GenomeGCF_020708755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 223 aa (72.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
123-222 aa · 100 aa · 44.8% of protein
Raw token
HATPase_c:123:7.2e-30:222:100:109- Raw architecture: HisKA:11:0.00000000000448:72:62:64#HATPase_c:123:7.2e-30:222:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708755::NZ_JAJFCP010000004.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219707-221276Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK490_07225RefSeq proteinWP_331473888.1
Context group ID
GCF_020708755::NZ_JAJFCP010000004.1::G00039Context members
LK490_RS07230LK490_RS07235
Partner locus tags
LK490_RS07230LK490_RS07235
Partner old locus tags
LK490_07225LK490_07230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_331473888.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK490_RS07230Primary locus identifier stored in the genes table.
Old locus tagLK490_07225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCP010000004.1Sequence record reported by the local genomic context database.
Genomic interval219 707-220 378 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span219 707-221 276 ntGCF_020708755::NZ_JAJFCP010000004.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708755::NZ_JAJFCP010000004.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCP010000004.1All displayed genes belong to this local TCS context.
Neighborhood span219 707-221 276 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 707 nt221 276 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK490_RS07230GCF_020708755#LK490_RS07230
HKClassicCurrent focus
219 707-220 378 nt · Reverse (-)
LK490_RS07235GCF_020708755#LK490_RS07235
RROmpR
220 599-221 276 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301805#G5A92_RS07060Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2908160
Simplified PFAM architecture for HKOC_2908160
PFAM domain coverage: 164 / 269 aa (61.0%)
1 aa269 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[56-118] | HATPase_c[168-268]
- Domain count: 2
- Matched identifier: HKOC_2908160
- Positioned domains: HisKA 56-118 ; HATPase_c 168-268
Cluster members and taxonomy
Representative gene: GCF_013301805#G5A92_RS07060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 884 906 · GCF_020708755
AssemblyASM2070875v1 · Contighaploid
Genome composition4 084 876 bp · 44,5% GCBlautia sp. MSK22_86
Signal transduction countsGenes 107 · HK 47 · RR 55CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key