1 HAMP#1
45-115 aa · 71 aa · 21.1% of protein
Raw token
HAMP:45:0.0000000000287:115:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK490_RS07010
Histidine kinase, Classic
Blautia sp. MSK22_86 · GCF_020708755
ClassHKTypeClassicLength336 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708755#LK490_RS07010Stable P2CS identifier used across views.
GenomeGCF_020708755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length336 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 336 aa (72.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa336 aa
Domain-by-domain annotation3 items
2 HisKA#2
120-186 aa · 67 aa · 19.9% of protein
Raw token
HisKA:120:1.4e-16:186:67:643 HATPase_c#3
230-336 aa · 107 aa · 31.8% of protein
Raw token
HATPase_c:230:7.64e-27:336:107:109- Raw architecture: HAMP:45:0.0000000000287:115:71:69#HisKA:120:1.4e-16:186:67:64#HATPase_c:230:7.64e-27:336:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708755::NZ_JAJFCP010000004.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span172485-174163Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK490_07005RefSeq proteinWP_118515455.1
Context group ID
GCF_020708755::NZ_JAJFCP010000004.1::G00037Context members
LK490_RS07010LK490_RS07015
Partner locus tags
LK490_RS07010LK490_RS07015
Partner old locus tags
LK490_07005LK490_07010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118515455.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK490_RS07010Primary locus identifier stored in the genes table.
Old locus tagLK490_07005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCP010000004.1Sequence record reported by the local genomic context database.
Genomic interval172 485-173 495 nt1 011 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span172 485-174 163 ntGCF_020708755::NZ_JAJFCP010000004.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708755::NZ_JAJFCP010000004.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCP010000004.1All displayed genes belong to this local TCS context.
Neighborhood span172 485-174 163 nt1 679 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
172 485 nt174 163 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK490_RS07010GCF_020708755#LK490_RS07010
HKClassicCurrent focus
172 485-173 495 nt · Reverse (-)
LK490_RS07015GCF_020708755#LK490_RS07015
RROmpR
173 492-174 163 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301805#G5A92_RS06840Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2847029
Simplified PFAM architecture for HKOC_2847029
PFAM domain coverage: 217 / 336 aa (64.6%)
1 aa336 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[70-115] | HisKA[120-185] | HATPase_c[231-335]
- Domain count: 3
- Matched identifier: HKOC_2847029
- Positioned domains: HAMP 70-115 ; HisKA 120-185 ; HATPase_c 231-335
Cluster members and taxonomy
Representative gene: GCF_013301805#G5A92_RS06840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 884 906 · GCF_020708755
AssemblyASM2070875v1 · Contighaploid
Genome composition4 084 876 bp · 44,5% GCBlautia sp. MSK22_86
Signal transduction countsGenes 107 · HK 47 · RR 55CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key