1 HAMP#1
152-223 aa · 72 aa · 15.8% of protein
Raw token
HAMP:152:0.0000143:223:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK490_RS04980
Histidine kinase, Classic
Blautia sp. MSK22_86 · GCF_020708755
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708755#LK490_RS04980Stable P2CS identifier used across views.
GenomeGCF_020708755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 455 aa (53.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-296 aa · 61 aa · 13.4% of protein
Raw token
HisKA:236:0.000000000000284:296:61:643 HATPase_c#3
345-454 aa · 110 aa · 24.2% of protein
Raw token
HATPase_c:345:1.38e-19:454:110:109- Raw architecture: HAMP:152:0.0000143:223:72:69#HisKA:236:0.000000000000284:296:61:64#HATPase_c:345:1.38e-19:454:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708755::NZ_JAJFCP010000003.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42364-44381Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK490_04975RefSeq proteinWP_173753559.1
Context group ID
GCF_020708755::NZ_JAJFCP010000003.1::G00035Context members
LK490_RS04980LK490_RS04985
Partner locus tags
LK490_RS04980LK490_RS04985
Partner old locus tags
LK490_04975LK490_04980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173753559.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK490_RS04980Primary locus identifier stored in the genes table.
Old locus tagLK490_04975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCP010000003.1Sequence record reported by the local genomic context database.
Genomic interval42 364-43 731 nt1 368 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 364-44 381 ntGCF_020708755::NZ_JAJFCP010000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708755::NZ_JAJFCP010000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span42 364-44 381 nt2 018 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 364 nt44 381 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK490_RS04980GCF_020708755#LK490_RS04980
HKClassicCurrent focus
42 364-43 731 nt · Reverse (-)
LK490_RS04985GCF_020708755#LK490_RS04985
RROmpR
43 716-44 381 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301805#G5A92_RS05835Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1904059
Simplified PFAM architecture for HKOC_1904059
PFAM domain coverage: 171 / 455 aa (37.6%)
1 aa455 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[236-297] | HATPase_c[346-454]
- Domain count: 2
- Matched identifier: HKOC_1904059
- Positioned domains: HisKA 236-297 ; HATPase_c 346-454
Cluster members and taxonomy
Representative gene: GCF_013301805#G5A92_RS05835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 884 906 · GCF_020708755
AssemblyASM2070875v1 · Contighaploid
Genome composition4 084 876 bp · 44,5% GCBlautia sp. MSK22_86
Signal transduction countsGenes 107 · HK 47 · RR 55CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key