1 Response_reg#1
5-114 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:5:5.32e-24:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK490_RS04900
Response regulator OmpR family
Blautia sp. MSK22_86 · GCF_020708755
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708755#LK490_RS04900Stable P2CS identifier used across views.
GenomeGCF_020708755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 221 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-217 aa · 71 aa · 32.1% of protein
Raw token
Trans_reg_C:147:1.75e-24:217:75:77- Raw architecture: Response_reg:5:5.32e-24:114:112:111#Trans_reg_C:147:1.75e-24:217:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708755::NZ_JAJFCP010000003.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23530-25613Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK490_04895RefSeq proteinWP_005423065.1
Context group ID
GCF_020708755::NZ_JAJFCP010000003.1::G00033Context members
LK490_RS04895LK490_RS04900
Partner locus tags
LK490_RS04895LK490_RS04900
Partner old locus tags
LK490_04890LK490_04895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005423065.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WC16Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WC16_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK490_RS04900Primary locus identifier stored in the genes table.
Old locus tagLK490_04895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCP010000003.1Sequence record reported by the local genomic context database.
Genomic interval24 948-25 613 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 530-25 613 ntGCF_020708755::NZ_JAJFCP010000003.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708755::NZ_JAJFCP010000003.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span23 530-25 613 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 530 nt25 613 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK490_RS04895GCF_020708755#LK490_RS04895
HKClassic
23 530-24 951 nt · Reverse (-)
LK490_RS04900GCF_020708755#LK490_RS04900
RROmpRCurrent focus
24 948-25 613 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153905#RUMOBE_RS03495Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1677872
Simplified PFAM architecture for RROC_1677872
PFAM domain coverage: 179 / 221 aa (81.0%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[147-217]
- Domain count: 2
- Matched identifier: RROC_1677872
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 147-217 ; Trans_reg_C 147-217
Cluster members and taxonomy
Representative gene: GCF_000153905#RUMOBE_RS03495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 884 906 · GCF_020708755
AssemblyASM2070875v1 · Contighaploid
Genome composition4 084 876 bp · 44,5% GCBlautia sp. MSK22_86
Signal transduction countsGenes 107 · HK 47 · RR 55CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key