1 HAMP#1
178-245 aa · 68 aa · 14.4% of protein
Raw token
HAMP:178:0.00000000942:245:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK490_RS04895
Histidine kinase, Classic
Blautia sp. MSK22_86 · GCF_020708755
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708755#LK490_RS04895Stable P2CS identifier used across views.
GenomeGCF_020708755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 473 aa (49.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation3 items
2 HisKA#2
257-317 aa · 61 aa · 12.9% of protein
Raw token
HisKA:257:0.0000000000395:317:61:643 HATPase_c#3
370-472 aa · 103 aa · 21.8% of protein
Raw token
HATPase_c:370:4.36e-26:472:106:109- Raw architecture: HAMP:178:0.00000000942:245:68:69#HisKA:257:0.0000000000395:317:61:64#HATPase_c:370:4.36e-26:472:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708755::NZ_JAJFCP010000003.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23530-25613Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK490_04890RefSeq proteinWP_173753567.1
Context group ID
GCF_020708755::NZ_JAJFCP010000003.1::G00033Context members
LK490_RS04895LK490_RS04900
Partner locus tags
LK490_RS04895LK490_RS04900
Partner old locus tags
LK490_04890LK490_04895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173753567.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK490_RS04895Primary locus identifier stored in the genes table.
Old locus tagLK490_04890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCP010000003.1Sequence record reported by the local genomic context database.
Genomic interval23 530-24 951 nt1 422 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span23 530-25 613 ntGCF_020708755::NZ_JAJFCP010000003.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708755::NZ_JAJFCP010000003.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span23 530-25 613 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 530 nt25 613 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK490_RS04895GCF_020708755#LK490_RS04895
HKClassicCurrent focus
23 530-24 951 nt · Reverse (-)
LK490_RS04900GCF_020708755#LK490_RS04900
RROmpR
24 948-25 613 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301805#G5A92_RS05915Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1690359
Simplified PFAM architecture for HKOC_1690359
PFAM domain coverage: 213 / 473 aa (45.0%)
1 aa473 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[195-244] | HisKA[257-316] | HATPase_c[370-472]
- Domain count: 3
- Matched identifier: HKOC_1690359
- Positioned domains: HAMP 195-244 ; HisKA 257-316 ; HATPase_c 370-472
Cluster members and taxonomy
Representative gene: GCF_013301805#G5A92_RS05915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 884 906 · GCF_020708755
AssemblyASM2070875v1 · Contighaploid
Genome composition4 084 876 bp · 44,5% GCBlautia sp. MSK22_86
Signal transduction countsGenes 107 · HK 47 · RR 55CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key