1 HAMP#1
113-182 aa · 70 aa · 16.1% of protein
Raw token
HAMP:113:0.000000000000256:182:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK490_RS04855
Histidine kinase, Classic
Blautia sp. MSK22_86 · GCF_020708755
ClassHKTypeClassicLength434 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708755#LK490_RS04855Stable P2CS identifier used across views.
GenomeGCF_020708755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length434 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 434 aa (55.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa434 aa
Domain-by-domain annotation3 items
2 HisKA#2
207-271 aa · 65 aa · 15.0% of protein
Raw token
HisKA:207:0.00000000000299:271:65:643 HATPase_c#3
319-425 aa · 107 aa · 24.7% of protein
Raw token
HATPase_c:319:9.15e-21:425:108:109- Raw architecture: HAMP:113:0.000000000000256:182:70:69#HisKA:207:0.00000000000299:271:65:64#HATPase_c:319:9.15e-21:425:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708755::NZ_JAJFCP010000003.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14591-16700Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK490_04850RefSeq proteinWP_227752248.1
Context group ID
GCF_020708755::NZ_JAJFCP010000003.1::G00032Context members
LK490_RS04850LK490_RS04855
Partner locus tags
LK490_RS04850LK490_RS04855
Partner old locus tags
LK490_04845LK490_04850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227752248.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK490_RS04855Primary locus identifier stored in the genes table.
Old locus tagLK490_04850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCP010000003.1Sequence record reported by the local genomic context database.
Genomic interval15 396-16 700 nt1 305 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 591-16 700 ntGCF_020708755::NZ_JAJFCP010000003.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708755::NZ_JAJFCP010000003.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span14 591-16 700 nt2 110 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 591 nt16 700 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK490_RS04850GCF_020708755#LK490_RS04850
RROmpR
14 591-15 256 nt · Forward (+)
LK490_RS04855GCF_020708755#LK490_RS04855
HKClassicCurrent focus
15 396-16 700 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301805#G5A92_RS05955Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1570317
Simplified PFAM architecture for HKOC_1570317
PFAM domain coverage: 224 / 486 aa (46.1%)
1 aa486 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[183-233] | HisKA[260-323] | HATPase_c[371-479]
- Domain count: 3
- Matched identifier: HKOC_1570317
- Positioned domains: HAMP 183-233 ; HisKA 260-323 ; HATPase_c 371-479
Cluster members and taxonomy
Representative gene: GCF_013301805#G5A92_RS05955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 884 906 · GCF_020708755
AssemblyASM2070875v1 · Contighaploid
Genome composition4 084 876 bp · 44,5% GCBlautia sp. MSK22_86
Signal transduction countsGenes 107 · HK 47 · RR 55CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key