1 HAMP#1
153-221 aa · 69 aa · 14.6% of protein
Raw token
HAMP:153:0.0000000000015:221:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK490_RS01725
Histidine kinase, Classic
Blautia sp. MSK22_86 · GCF_020708755
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708755#LK490_RS01725Stable P2CS identifier used across views.
GenomeGCF_020708755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage221 / 473 aa (46.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-312 aa · 62 aa · 13.1% of protein
Raw token
HisKA:251:0.00000000442:312:62:643 HATPase_c#3
358-447 aa · 90 aa · 19.0% of protein
Raw token
HATPase_c:358:6.77e-16:447:90:109- Raw architecture: HAMP:153:0.0000000000015:221:69:69#HisKA:251:0.00000000442:312:62:64#HATPase_c:358:6.77e-16:447:90:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708755::NZ_JAJFCP010000001.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span349097-351179Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK490_01725RefSeq proteinWP_055056589.1
Context group ID
GCF_020708755::NZ_JAJFCP010000001.1::G00009Context members
LK490_RS01720LK490_RS01725
Partner locus tags
LK490_RS01720LK490_RS01725
Partner old locus tags
LK490_01720LK490_01725
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055056589.1Primary protein accession used for annex mappings.
UniProt accessionA0AAE3DN41Primary UniProt accession resolved in the annex database.
UniProt IDA0AAE3DN41_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK490_RS01725Primary locus identifier stored in the genes table.
Old locus tagLK490_01725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCP010000001.1Sequence record reported by the local genomic context database.
Genomic interval349 758-351 179 nt1 422 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span349 097-351 179 ntGCF_020708755::NZ_JAJFCP010000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708755::NZ_JAJFCP010000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span349 097-351 179 nt2 083 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
349 097 nt351 179 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK490_RS01720GCF_020708755#LK490_RS01720
RROmpR
349 097-349 774 nt · Forward (+)
LK490_RS01725GCF_020708755#LK490_RS01725
HKClassicCurrent focus
349 758-351 179 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405215#ARA06_RS13305Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1687893
Simplified PFAM architecture for HKOC_1687893
PFAM domain coverage: 219 / 473 aa (46.3%)
1 aa473 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-221] | HisKA[249-311] | HATPase_c[359-463]
- Domain count: 3
- Matched identifier: HKOC_1687893
- Positioned domains: HAMP 171-221 ; HisKA 249-311 ; HATPase_c 359-463
Cluster members and taxonomy
Representative gene: GCF_001405215#ARA06_RS13305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 884 906 · GCF_020708755
AssemblyASM2070875v1 · Contighaploid
Genome composition4 084 876 bp · 44,5% GCBlautia sp. MSK22_86
Signal transduction countsGenes 107 · HK 47 · RR 55CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key