1 Response_reg#1
6-121 aa · 116 aa · 43.3% of protein
Raw token
Response_reg:6:1.82e-18:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK490_RS01040
Response regulator Spo0A family
Blautia sp. MSK22_86 · GCF_020708755
ClassRRTypeSpo0ALength268 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020708755#LK490_RS01040Stable P2CS identifier used across views.
GenomeGCF_020708755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 268 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa268 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
155-258 aa · 104 aa · 38.8% of protein
Raw token
Spo0A_C:155:1.87e-65:258:104:104- Raw architecture: Response_reg:6:1.82e-18:121:116:111#Spo0A_C:155:1.87e-65:258:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020708755::NZ_JAJFCP010000001.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span208091-208897Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK490_01040RefSeq proteinWP_015524464.1
Context group ID
GCF_020708755::NZ_JAJFCP010000001.1::G00007Context members
LK490_RS01040
Partner locus tags
LK490_RS01040
Partner old locus tags
LK490_01040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015524464.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WBK7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WBK7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK490_RS01040Primary locus identifier stored in the genes table.
Old locus tagLK490_01040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFCP010000001.1Sequence record reported by the local genomic context database.
Genomic interval208 091-208 897 nt807 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span208 091-208 897 ntGCF_020708755::NZ_JAJFCP010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708755::NZ_JAJFCP010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFCP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span208 091-208 897 nt807 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
208 091 nt208 897 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LK490_RS01040GCF_020708755#LK490_RS01040
RRSpo0ACurrent focus
208 091-208 897 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209835#CK1_RS00905Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0619469
Simplified PFAM architecture for RROC_0619469
PFAM domain coverage: 220 / 268 aa (82.1%)
1 aa268 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-121] | Spo0A_C[155-258]
- Domain count: 2
- Matched identifier: RROC_0619469
- Positioned domains: Response_reg 6-121 ; Response_reg 6-121 ; Spo0A_C 155-258 ; Spo0A_C 155-258
Cluster members and taxonomy
Representative gene: GCF_000209835#CK1_RS00905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 884 906 · GCF_020708755
AssemblyASM2070875v1 · Contighaploid
Genome composition4 084 876 bp · 44,5% GCBlautia sp. MSK22_86
Signal transduction countsGenes 107 · HK 47 · RR 55CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key