1 HAMP#1
144-211 aa · 68 aa · 15.5% of protein
Raw token
HAMP:144:0.00000499:211:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK479_RS11015
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020708735
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708735#LK479_RS11015Stable P2CS identifier used across views.
GenomeGCF_020708735Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage211 / 438 aa (48.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation3 items
2 HisKA#2
232-296 aa · 65 aa · 14.8% of protein
Raw token
HisKA:232:0.00000555:296:65:643 HATPase_c#3
342-419 aa · 78 aa · 17.8% of protein
Raw token
HATPase_c:342:0.0000000495:419:85:109- Raw architecture: HAMP:144:0.00000499:211:68:69#HisKA:232:0.00000555:296:65:64#HATPase_c:342:0.0000000495:419:85:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708735::NZ_JAJFBW010000019.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24280-26246Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK479_11020RefSeq proteinWP_008792830.1
Context group ID
GCF_020708735::NZ_JAJFBW010000019.1::G00010Context members
LK479_RS11010LK479_RS11015
Partner locus tags
LK479_RS11010LK479_RS11015
Partner old locus tags
LK479_11015LK479_11020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008792830.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3E5L3Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3E5L3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK479_RS11015Primary locus identifier stored in the genes table.
Old locus tagLK479_11020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBW010000019.1Sequence record reported by the local genomic context database.
Genomic interval24 930-26 246 nt1 317 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 280-26 246 ntGCF_020708735::NZ_JAJFBW010000019.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708735::NZ_JAJFBW010000019.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBW010000019.1All displayed genes belong to this local TCS context.
Neighborhood span24 280-26 246 nt1 967 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 280 nt26 246 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK479_RS11010GCF_020708735#LK479_RS11010
RROmpR
24 280-24 933 nt · Forward (+)
LK479_RS11015GCF_020708735#LK479_RS11015
HKClassicCurrent focus
24 930-26 246 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434415#DW242_RS16545Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2094778
Simplified PFAM architecture for HKOC_2094778
PFAM domain coverage: 143 / 438 aa (32.6%)
1 aa438 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-296] | HATPase_c[342-420]
- Domain count: 2
- Matched identifier: HKOC_2094778
- Positioned domains: HisKA 233-296 ; HATPase_c 342-420
Cluster members and taxonomy
Representative gene: GCF_003434415#DW242_RS16545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020708735
AssemblyASM2070873v1 · Contighaploid
Genome composition3 816 566 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key