1 Response_reg#1
3-111 aa · 109 aa · 50.2% of protein
Raw token
Response_reg:3:1.45e-28:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK479_RS11010
Response regulator OmpR family
Thomasclavelia ramosa · GCF_020708735
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708735#LK479_RS11010Stable P2CS identifier used across views.
GenomeGCF_020708735Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 217 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-214 aa · 73 aa · 33.6% of protein
Raw token
Trans_reg_C:142:1.25e-22:214:78:77- Raw architecture: Response_reg:3:1.45e-28:111:111:111#Trans_reg_C:142:1.25e-22:214:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708735::NZ_JAJFBW010000019.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24280-26246Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK479_11015RefSeq proteinWP_008792831.1
Context group ID
GCF_020708735::NZ_JAJFBW010000019.1::G00010Context members
LK479_RS11010LK479_RS11015
Partner locus tags
LK479_RS11010LK479_RS11015
Partner old locus tags
LK479_11015LK479_11020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008792831.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3AAZ9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3AAZ9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK479_RS11010Primary locus identifier stored in the genes table.
Old locus tagLK479_11015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBW010000019.1Sequence record reported by the local genomic context database.
Genomic interval24 280-24 933 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 280-26 246 ntGCF_020708735::NZ_JAJFBW010000019.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708735::NZ_JAJFBW010000019.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBW010000019.1All displayed genes belong to this local TCS context.
Neighborhood span24 280-26 246 nt1 967 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 280 nt26 246 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK479_RS11010GCF_020708735#LK479_RS11010
RROmpRCurrent focus
24 280-24 933 nt · Forward (+)
LK479_RS11015GCF_020708735#LK479_RS11015
HKClassic
24 930-26 246 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003434415#DW242_RS16540Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1854315
Simplified PFAM architecture for RROC_1854315
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-110] | Trans_reg_C[142-214]
- Domain count: 2
- Matched identifier: RROC_1854315
- Positioned domains: Response_reg 3-110 ; Response_reg 3-110 ; Trans_reg_C 142-214 ; Trans_reg_C 142-214
Cluster members and taxonomy
Representative gene: GCF_003434415#DW242_RS16540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020708735
AssemblyASM2070873v1 · Contighaploid
Genome composition3 816 566 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key