1 HisKA#1
140-203 aa · 64 aa · 17.7% of protein
Raw token
HisKA:140:0.0000000000236:203:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK479_RS06540
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020708735
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708735#LK479_RS06540Stable P2CS identifier used across views.
GenomeGCF_020708735Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 361 aa (47.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
253-360 aa · 108 aa · 29.9% of protein
Raw token
HATPase_c:253:9.1e-22:360:109:109- Raw architecture: HisKA:140:0.0000000000236:203:64:64#HATPase_c:253:9.1e-22:360:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708735::NZ_JAJFBW010000007.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72151-73921Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK479_06545RefSeq proteinWP_008791282.1
Context group ID
GCF_020708735::NZ_JAJFBW010000007.1::G00027Context members
LK479_RS06535LK479_RS06540
Partner locus tags
LK479_RS06535LK479_RS06540
Partner old locus tags
LK479_06540LK479_06545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008791282.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3AFD7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3AFD7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK479_RS06540Primary locus identifier stored in the genes table.
Old locus tagLK479_06545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBW010000007.1Sequence record reported by the local genomic context database.
Genomic interval72 836-73 921 nt1 086 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 151-73 921 ntGCF_020708735::NZ_JAJFBW010000007.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708735::NZ_JAJFBW010000007.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBW010000007.1All displayed genes belong to this local TCS context.
Neighborhood span72 151-73 921 nt1 771 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 151 nt73 921 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK479_RS06535GCF_020708735#LK479_RS06535
RROmpR
72 151-72 843 nt · Forward (+)
LK479_RS06540GCF_020708735#LK479_RS06540
HKClassicCurrent focus
72 836-73 921 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS04690Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2740562
Simplified PFAM architecture for HKOC_2740562
PFAM domain coverage: 172 / 361 aa (47.6%)
1 aa361 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[140-203] | HATPase_c[253-360]
- Domain count: 2
- Matched identifier: HKOC_2740562
- Positioned domains: HisKA 140-203 ; HATPase_c 253-360
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS04690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020708735
AssemblyASM2070873v1 · Contighaploid
Genome composition3 816 566 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key