1 HisKA#1
411-478 aa · 68 aa · 10.6% of protein
Raw token
HisKA:411:0.00000000000334:478:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LK479_RS01040
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020708735
ClassHKTypeClassicLength639 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020708735#LK479_RS01040Stable P2CS identifier used across views.
GenomeGCF_020708735Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length639 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 639 aa (28.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa639 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
523-634 aa · 112 aa · 17.5% of protein
Raw token
HATPase_c:523:5.74e-27:634:112:109- Raw architecture: HisKA:411:0.00000000000334:478:68:64#HATPase_c:523:5.74e-27:634:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020708735::NZ_JAJFBW010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span190020-192630Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLK479_01040RefSeq proteinWP_003536532.1
Context group ID
GCF_020708735::NZ_JAJFBW010000001.1::G00001Context members
LK479_RS01040LK479_RS01045
Partner locus tags
LK479_RS01040LK479_RS01045
Partner old locus tags
LK479_01040LK479_01045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003536532.1Primary protein accession used for annex mappings.
UniProt accessionB0N468Primary UniProt accession resolved in the annex database.
UniProt IDB0N468_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLK479_RS01040Primary locus identifier stored in the genes table.
Old locus tagLK479_01040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJFBW010000001.1Sequence record reported by the local genomic context database.
Genomic interval190 020-191 939 nt1 920 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span190 020-192 630 ntGCF_020708735::NZ_JAJFBW010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020708735::NZ_JAJFBW010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJFBW010000001.1All displayed genes belong to this local TCS context.
Neighborhood span190 020-192 630 nt2 611 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
190 020 nt192 630 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LK479_RS01040GCF_020708735#LK479_RS01040
HKClassicCurrent focus
190 020-191 939 nt · Forward (+)
LK479_RS01045GCF_020708735#LK479_RS01045
RROmpR
191 932-192 630 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS05970Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0923550
Simplified PFAM architecture for HKOC_0923550
PFAM domain coverage: 285 / 639 aa (44.6%)
1 aa639 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[153-259] | HisKA[411-478] | HATPase_c[524-633]
- Domain count: 3
- Matched identifier: HKOC_0923550
- Positioned domains: DUF4118 153-259 ; HisKA 411-478 ; HATPase_c 524-633
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS05970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020708735
AssemblyASM2070873v1 · Contighaploid
Genome composition3 816 566 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 53 · HK 24 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key