1 HisKA#1
240-303 aa · 64 aa · 14.4% of protein
Raw token
HisKA:240:0.00000000469:303:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI242_RS02495
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_020563245
ClassHKTypeClassicLength445 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020563245#LI242_RS02495Stable P2CS identifier used across views.
GenomeGCF_020563245Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length445 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 445 aa (35.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
347-441 aa · 95 aa · 21.3% of protein
Raw token
HATPase_c:347:0.0000000000267:441:104:109- Raw architecture: HisKA:240:0.00000000469:303:64:64#HATPase_c:347:0.0000000000267:441:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020563245::NZ_JAJCQD010000002.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span192301-194291Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI242_02495RefSeq proteinWP_022007942.1
Context group ID
GCF_020563245::NZ_JAJCQD010000002.1::G00015Context members
LI242_RS02495LI242_RS02500
Partner locus tags
LI242_RS02495LI242_RS02500
Partner old locus tags
LI242_02495LI242_02500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022007942.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI242_RS02495Primary locus identifier stored in the genes table.
Old locus tagLI242_02495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCQD010000002.1Sequence record reported by the local genomic context database.
Genomic interval192 301-193 638 nt1 338 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span192 301-194 291 ntGCF_020563245::NZ_JAJCQD010000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020563245::NZ_JAJCQD010000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCQD010000002.1All displayed genes belong to this local TCS context.
Neighborhood span192 301-194 291 nt1 991 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
192 301 nt194 291 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI242_RS02495GCF_020563245#LI242_RS02495
HKClassicCurrent focus
192 301-193 638 nt · Reverse (-)
LI242_RS02500GCF_020563245#LI242_RS02500
RROmpR
193 638-194 291 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462905#DXA75_RS04010Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2024339
Simplified PFAM architecture for HKOC_2024339
PFAM domain coverage: 157 / 445 aa (35.3%)
1 aa445 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[240-303] | HATPase_c[348-440]
- Domain count: 2
- Matched identifier: HKOC_2024339
- Positioned domains: HisKA 240-303 ; HATPase_c 348-440
Cluster members and taxonomy
Representative gene: GCF_003462905#DXA75_RS04010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_020563245
AssemblyASM2056324v1 · Contighaploid
Genome composition3 306 009 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 48 · HK 22 · RR 26CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key