1 HisKA#1
73-138 aa · 66 aa · 22.6% of protein
Raw token
HisKA:73:0.0000000000000144:138:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI127_RS01680
Histidine kinase, Classic
Anaerostipes hadrus · GCF_020560085
ClassHKTypeClassicLength292 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020560085#LI127_RS01680Stable P2CS identifier used across views.
GenomeGCF_020560085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length292 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 292 aa (56.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa292 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
188-287 aa · 100 aa · 34.2% of protein
Raw token
HATPase_c:188:0.00000000000000332:287:104:109- Raw architecture: HisKA:73:0.0000000000000144:138:66:64#HATPase_c:188:0.00000000000000332:287:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020560085::NZ_JAJCMD010000001.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span345270-346148Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI127_01680RefSeq proteinWP_004611592.1
Context group ID
GCF_020560085::NZ_JAJCMD010000001.1::G00004Context members
LI127_RS01680
Partner locus tags
LI127_RS01680
Partner old locus tags
LI127_01680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004611592.1Primary protein accession used for annex mappings.
UniProt accessionA5Z501Primary UniProt accession resolved in the annex database.
UniProt IDA5Z501_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI127_RS01680Primary locus identifier stored in the genes table.
Old locus tagLI127_01680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCMD010000001.1Sequence record reported by the local genomic context database.
Genomic interval345 270-346 148 nt879 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span345 270-346 148 ntGCF_020560085::NZ_JAJCMD010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020560085::NZ_JAJCMD010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCMD010000001.1All displayed genes belong to this local TCS context.
Neighborhood span345 270-346 148 nt879 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
345 270 nt346 148 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LI127_RS01680GCF_020560085#LI127_RS01680
HKClassicCurrent focus
345 270-346 148 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153885#EUBVEN_RS05840Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2893905
Simplified PFAM architecture for HKOC_2893905
PFAM domain coverage: 162 / 292 aa (55.5%)
1 aa292 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[74-137] | HATPase_c[187-284]
- Domain count: 2
- Matched identifier: HKOC_2893905
- Positioned domains: HisKA 74-137 ; HATPase_c 187-284
Cluster members and taxonomy
Representative gene: GCF_000153885#EUBVEN_RS05840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020560085
AssemblyASM2056008v1 · Contighaploid
Genome composition3 156 617 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 57 · HK 29 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key