1 HisKA#1
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.000000113:150:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI000_RS04615
Histidine kinase, Classic
Agathobacter rectalis · GCF_020557695
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557695#LI000_RS04615Stable P2CS identifier used across views.
GenomeGCF_020557695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 305 aa (55.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
202-304 aa · 103 aa · 33.8% of protein
Raw token
HATPase_c:202:7.11e-31:304:103:109- Raw architecture: HisKA:85:0.000000113:150:66:64#HATPase_c:202:7.11e-31:304:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557695::NZ_JAJCJR010000004.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88752-90367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI000_04620RefSeq proteinWP_306782893.1
Context group ID
GCF_020557695::NZ_JAJCJR010000004.1::G00034Context members
LI000_RS04615LI000_RS04620
Partner locus tags
LI000_RS04615LI000_RS04620
Partner old locus tags
LI000_04620LI000_04625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_306782893.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4UNM0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4UNM0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI000_RS04615Primary locus identifier stored in the genes table.
Old locus tagLI000_04620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJR010000004.1Sequence record reported by the local genomic context database.
Genomic interval88 752-89 669 nt918 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span88 752-90 367 ntGCF_020557695::NZ_JAJCJR010000004.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557695::NZ_JAJCJR010000004.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJR010000004.1All displayed genes belong to this local TCS context.
Neighborhood span88 752-90 367 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 752 nt90 367 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI000_RS04615GCF_020557695#LI000_RS04615
HKClassicCurrent focus
88 752-89 669 nt · Reverse (-)
LI000_RS04620GCF_020557695#LI000_RS04620
RROmpR
89 675-90 367 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557675#LIZ82_RS05645Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882653
Simplified PFAM architecture for HKOC_2882653
PFAM domain coverage: 170 / 305 aa (55.7%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[199-304]
- Domain count: 2
- Matched identifier: HKOC_2882653
- Positioned domains: HisKA 85-148 ; HATPase_c 199-304
Cluster members and taxonomy
Representative gene: GCF_020557675#LIZ82_RS05645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557695
AssemblyASM2055769v1 · Contighaploid
Genome composition3 471 285 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 86 · HK 36 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key