1 HisKA#1
119-180 aa · 62 aa · 18.5% of protein
Raw token
HisKA:119:0.0000000209:180:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LI000_RS04375
Histidine kinase, Classic
Agathobacter rectalis · GCF_020557695
ClassHKTypeClassicLength335 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557695#LI000_RS04375Stable P2CS identifier used across views.
GenomeGCF_020557695Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length335 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 335 aa (49.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa335 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
226-330 aa · 105 aa · 31.3% of protein
Raw token
HATPase_c:226:4.17e-20:330:106:109- Raw architecture: HisKA:119:0.0000000209:180:63:64#HATPase_c:226:4.17e-20:330:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557695::NZ_JAJCJR010000004.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53294-54971Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLI000_04380RefSeq proteinWP_055145335.1
Context group ID
GCF_020557695::NZ_JAJCJR010000004.1::G00033Context members
LI000_RS04375LI000_RS04380
Partner locus tags
LI000_RS04375LI000_RS04380
Partner old locus tags
LI000_04380LI000_04385
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055145335.1Primary protein accession used for annex mappings.
UniProt accessionA0AAE3E6H3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAE3E6H3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLI000_RS04375Primary locus identifier stored in the genes table.
Old locus tagLI000_04380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJR010000004.1Sequence record reported by the local genomic context database.
Genomic interval53 294-54 301 nt1 008 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 294-54 971 ntGCF_020557695::NZ_JAJCJR010000004.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557695::NZ_JAJCJR010000004.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJR010000004.1All displayed genes belong to this local TCS context.
Neighborhood span53 294-54 971 nt1 678 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 294 nt54 971 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LI000_RS04375GCF_020557695#LI000_RS04375
HKClassicCurrent focus
53 294-54 301 nt · Reverse (-)
LI000_RS04380GCF_020557695#LI000_RS04380
RROmpR
54 303-54 971 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404315#ARB66_RS05750Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2848321
Simplified PFAM architecture for HKOC_2848321
PFAM domain coverage: 167 / 335 aa (49.9%)
1 aa335 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[117-180] | HATPase_c[228-330]
- Domain count: 2
- Matched identifier: HKOC_2848321
- Positioned domains: HisKA 117-180 ; HATPase_c 228-330
Cluster members and taxonomy
Representative gene: GCF_001404315#ARB66_RS05750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_020557695
AssemblyASM2055769v1 · Contighaploid
Genome composition3 471 285 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 86 · HK 36 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key