1 HAMP#1
183-244 aa · 62 aa · 12.9% of protein
Raw token
HAMP:183:0.00000000283:244:62:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ84_RS08205
Histidine kinase, Classic
Roseburia faecis · GCF_020557615
ClassHKTypeClassicLength480 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557615#LIZ84_RS08205Stable P2CS identifier used across views.
GenomeGCF_020557615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length480 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 480 aa (50.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa480 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-315 aa · 65 aa · 13.5% of protein
Raw token
HisKA:251:0.00000000000000107:315:65:643 HATPase_c#3
363-475 aa · 113 aa · 23.5% of protein
Raw token
HATPase_c:363:1.18e-31:475:113:109- Raw architecture: HAMP:183:0.00000000283:244:62:69#HisKA:251:0.00000000000000107:315:65:64#HATPase_c:363:1.18e-31:475:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557615::NZ_JAJCJO010000009.1::G00064
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span108965-111099Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ84_08235RefSeq proteinWP_227249178.1
Context group ID
GCF_020557615::NZ_JAJCJO010000009.1::G00064Context members
LIZ84_RS08205LIZ84_RS08210
Partner locus tags
LIZ84_RS08205LIZ84_RS08210
Partner old locus tags
LIZ84_08235LIZ84_08240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227249178.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ84_RS08205Primary locus identifier stored in the genes table.
Old locus tagLIZ84_08235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJO010000009.1Sequence record reported by the local genomic context database.
Genomic interval108 965-110 407 nt1 443 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span108 965-111 099 ntGCF_020557615::NZ_JAJCJO010000009.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557615::NZ_JAJCJO010000009.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJO010000009.1All displayed genes belong to this local TCS context.
Neighborhood span108 965-111 099 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 965 nt111 099 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ84_RS08205GCF_020557615#LIZ84_RS08205
HKClassicCurrent focus
108 965-110 407 nt · Reverse (-)
LIZ84_RS08210GCF_020557615#LIZ84_RS08210
RROmpR
110 404-111 099 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557615#LIZ84_RS08205The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1623730
Simplified PFAM architecture for HKOC_1623730
PFAM domain coverage: 220 / 480 aa (45.8%)
1 aa480 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[201-245] | HisKA[251-314] | HATPase_c[364-474]
- Domain count: 3
- Matched identifier: HKOC_1623730
- Positioned domains: HAMP 201-245 ; HisKA 251-314 ; HATPase_c 364-474
Cluster members and taxonomy
Representative gene: GCF_020557615#LIZ84_RS08205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_020557615
AssemblyASM2055761v1 · Contighaploid
Genome composition3 609 441 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key