1 Response_reg#1
4-118 aa · 115 aa · 49.6% of protein
Raw token
Response_reg:4:6.68e-17:118:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ84_RS05595
Response regulator LytTR family
Roseburia faecis · GCF_020557615
ClassRRTypeLytTRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020557615#LIZ84_RS05595Stable P2CS identifier used across views.
GenomeGCF_020557615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 232 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-227 aa · 82 aa · 35.3% of protein
Raw token
LytTR:146:3.5e-20:227:88:98- Raw architecture: Response_reg:4:6.68e-17:118:117:111#LytTR:146:3.5e-20:227:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020557615::NZ_JAJCJO010000006.1::G00050
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span18196-18894Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ84_05615RefSeq proteinWP_022045514.1
Context group ID
GCF_020557615::NZ_JAJCJO010000006.1::G00050Context members
LIZ84_RS05595
Partner locus tags
LIZ84_RS05595
Partner old locus tags
LIZ84_05615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022045514.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ84_RS05595Primary locus identifier stored in the genes table.
Old locus tagLIZ84_05615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJO010000006.1Sequence record reported by the local genomic context database.
Genomic interval18 196-18 894 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 196-18 894 ntGCF_020557615::NZ_JAJCJO010000006.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557615::NZ_JAJCJO010000006.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJO010000006.1All displayed genes belong to this local TCS context.
Neighborhood span18 196-18 894 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 196 nt18 894 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIZ84_RS05595GCF_020557615#LIZ84_RS05595
RRLytTRCurrent focus
18 196-18 894 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015549075#I2C34_RS06720Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1136016
Simplified PFAM architecture for RROC_1136016
PFAM domain coverage: 200 / 232 aa (86.2%)
1 aa232 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-117] | LytTR[141-226]
- Domain count: 2
- Matched identifier: RROC_1136016
- Positioned domains: Response_reg 4-117 ; LytTR 141-226
Cluster members and taxonomy
Representative gene: GCF_015549075#I2C34_RS06720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_020557615
AssemblyASM2055761v1 · Contighaploid
Genome composition3 609 441 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key