1 HisKA#1
85-146 aa · 62 aa · 20.5% of protein
Raw token
HisKA:85:0.0000000000442:146:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ84_RS05530
Histidine kinase, Classic
Roseburia faecis · GCF_020557615
ClassHKTypeClassicLength302 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557615#LIZ84_RS05530Stable P2CS identifier used across views.
GenomeGCF_020557615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 302 aa (57.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
191-300 aa · 110 aa · 36.4% of protein
Raw token
HATPase_c:191:3e-28:300:110:109- Raw architecture: HisKA:85:0.0000000000442:146:62:64#HATPase_c:191:3e-28:300:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557615::NZ_JAJCJO010000006.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5417-7005Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ84_05550RefSeq proteinWP_227248868.1
Context group ID
GCF_020557615::NZ_JAJCJO010000006.1::G00049Context members
LIZ84_RS05530LIZ84_RS05535
Partner locus tags
LIZ84_RS05530LIZ84_RS05535
Partner old locus tags
LIZ84_05550LIZ84_05555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227248868.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ84_RS05530Primary locus identifier stored in the genes table.
Old locus tagLIZ84_05550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJO010000006.1Sequence record reported by the local genomic context database.
Genomic interval5 417-6 325 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 417-7 005 ntGCF_020557615::NZ_JAJCJO010000006.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557615::NZ_JAJCJO010000006.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJO010000006.1All displayed genes belong to this local TCS context.
Neighborhood span5 417-7 005 nt1 589 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 417 nt7 005 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ84_RS05530GCF_020557615#LIZ84_RS05530
HKClassicCurrent focus
5 417-6 325 nt · Reverse (-)
LIZ84_RS05535GCF_020557615#LIZ84_RS05535
RROmpR
6 322-7 005 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557615#LIZ84_RS05530The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2885250
Simplified PFAM architecture for HKOC_2885250
PFAM domain coverage: 171 / 302 aa (56.6%)
1 aa302 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-146] | HATPase_c[191-299]
- Domain count: 2
- Matched identifier: HKOC_2885250
- Positioned domains: HisKA 85-146 ; HATPase_c 191-299
Cluster members and taxonomy
Representative gene: GCF_020557615#LIZ84_RS05530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_020557615
AssemblyASM2055761v1 · Contighaploid
Genome composition3 609 441 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key