1 Response_reg#1
9-117 aa · 109 aa · 47.2% of protein
Raw token
Response_reg:9:2.93e-28:117:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ84_RS04890
Response regulator OmpR family
Roseburia faecis · GCF_020557615
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557615#LIZ84_RS04890Stable P2CS identifier used across views.
GenomeGCF_020557615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 231 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-229 aa · 74 aa · 32.0% of protein
Raw token
Trans_reg_C:156:1.97e-24:229:78:77- Raw architecture: Response_reg:9:2.93e-28:117:110:111#Trans_reg_C:156:1.97e-24:229:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557615::NZ_JAJCJO010000005.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10306-11933Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ84_04910RefSeq proteinWP_227248815.1
Context group ID
GCF_020557615::NZ_JAJCJO010000005.1::G00045Context members
LIZ84_RS04890LIZ84_RS04895
Partner locus tags
LIZ84_RS04890LIZ84_RS04895
Partner old locus tags
LIZ84_04910LIZ84_04915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227248815.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ84_RS04890Primary locus identifier stored in the genes table.
Old locus tagLIZ84_04910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJO010000005.1Sequence record reported by the local genomic context database.
Genomic interval10 306-11 001 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 306-11 933 ntGCF_020557615::NZ_JAJCJO010000005.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557615::NZ_JAJCJO010000005.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJO010000005.1All displayed genes belong to this local TCS context.
Neighborhood span10 306-11 933 nt1 628 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 306 nt11 933 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ84_RS04890GCF_020557615#LIZ84_RS04890
RROmpRCurrent focus
10 306-11 001 nt · Forward (+)
LIZ84_RS04895GCF_020557615#LIZ84_RS04895
HKClassic
10 989-11 933 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557615#LIZ84_RS04890The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1178425
Simplified PFAM architecture for RROC_1178425
PFAM domain coverage: 181 / 231 aa (78.4%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-116] | Trans_reg_C[156-228]
- Domain count: 2
- Matched identifier: RROC_1178425
- Positioned domains: Response_reg 9-116 ; Trans_reg_C 156-228
Cluster members and taxonomy
Representative gene: GCF_020557615#LIZ84_RS04890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_020557615
AssemblyASM2055761v1 · Contighaploid
Genome composition3 609 441 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key