1 HisKA#1
325-389 aa · 65 aa · 7.2% of protein
Raw token
HisKA:325:0.00000000000000731:389:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ84_RS04175
Histidine kinase, Hybrid
Roseburia faecis · GCF_020557615
ClassHKTypeHybridLength898 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557615#LIZ84_RS04175Stable P2CS identifier used across views.
GenomeGCF_020557615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length898 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage283 / 898 aa (31.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa898 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
436-543 aa · 108 aa · 12.0% of protein
Raw token
HATPase_c:436:8.37e-30:543:108:1093 Response_reg#3
587-696 aa · 110 aa · 12.2% of protein
Raw token
Response_reg:587:2.94e-23:696:111:111- Raw architecture: HisKA:325:0.00000000000000731:389:65:64#HATPase_c:436:8.37e-30:543:108:109#Response_reg:587:2.94e-23:696:111:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557615::NZ_JAJCJO010000004.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59429-63572Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ84_04195RefSeq proteinWP_227248769.1
Context group ID
GCF_020557615::NZ_JAJCJO010000004.1::G00042Context members
LIZ84_RS04175LIZ84_RS04180
Partner locus tags
LIZ84_RS04175LIZ84_RS04180
Partner old locus tags
LIZ84_04195LIZ84_04200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227248769.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ84_RS04175Primary locus identifier stored in the genes table.
Old locus tagLIZ84_04195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJO010000004.1Sequence record reported by the local genomic context database.
Genomic interval59 429-62 125 nt2 697 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 429-63 572 ntGCF_020557615::NZ_JAJCJO010000004.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557615::NZ_JAJCJO010000004.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJO010000004.1All displayed genes belong to this local TCS context.
Neighborhood span59 429-63 572 nt4 144 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 429 nt63 572 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ84_RS04175GCF_020557615#LIZ84_RS04175
HKHybridCurrent focus
59 429-62 125 nt · Reverse (-)
LIZ84_RS04180GCF_020557615#LIZ84_RS04180
RRRpfG
62 133-63 572 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020557615#LIZ84_RS04175The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0409804
Simplified PFAM architecture for HKOC_0409804
PFAM domain coverage: 283 / 898 aa (31.5%)
1 aa898 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[325-389] | HATPase_c[436-544] | Response_reg[587-695]
- Domain count: 3
- Matched identifier: HKOC_0409804
- Positioned domains: HisKA 325-389 ; HATPase_c 436-544 ; Response_reg 587-695
Cluster members and taxonomy
Representative gene: GCF_020557615#LIZ84_RS04175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_020557615
AssemblyASM2055761v1 · Contighaploid
Genome composition3 609 441 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key