1 HisKA#1
89-149 aa · 61 aa · 20.4% of protein
Raw token
HisKA:89:0.00000000000188:149:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ84_RS03875
Histidine kinase, Classic
Roseburia faecis · GCF_020557615
ClassHKTypeClassicLength299 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020557615#LIZ84_RS03875Stable P2CS identifier used across views.
GenomeGCF_020557615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length299 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 299 aa (50.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa299 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
196-284 aa · 89 aa · 29.8% of protein
Raw token
HATPase_c:196:0.0000000000000716:284:95:109- Raw architecture: HisKA:89:0.00000000000188:149:61:64#HATPase_c:196:0.0000000000000716:284:95:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020557615::NZ_JAJCJO010000003.1::G00032
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span206056-206955Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ84_03890RefSeq proteinWP_202193868.1
Context group ID
GCF_020557615::NZ_JAJCJO010000003.1::G00032Context members
LIZ84_RS03875
Partner locus tags
LIZ84_RS03875
Partner old locus tags
LIZ84_03890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_202193868.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ84_RS03875Primary locus identifier stored in the genes table.
Old locus tagLIZ84_03890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJO010000003.1Sequence record reported by the local genomic context database.
Genomic interval206 056-206 955 nt900 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span206 056-206 955 ntGCF_020557615::NZ_JAJCJO010000003.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557615::NZ_JAJCJO010000003.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJO010000003.1All displayed genes belong to this local TCS context.
Neighborhood span206 056-206 955 nt900 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
206 056 nt206 955 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIZ84_RS03875GCF_020557615#LIZ84_RS03875
HKClassicCurrent focus
206 056-206 955 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015558055#I2G75_RS16300Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2888010
Simplified PFAM architecture for HKOC_2888010
PFAM domain coverage: 154 / 299 aa (51.5%)
1 aa299 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-148] | HATPase_c[196-286]
- Domain count: 2
- Matched identifier: HKOC_2888010
- Positioned domains: HisKA 86-148 ; HATPase_c 196-286
Cluster members and taxonomy
Representative gene: GCF_015558055#I2G75_RS16300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_020557615
AssemblyASM2055761v1 · Contighaploid
Genome composition3 609 441 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key