1 Hpt#1
5-97 aa · 93 aa · 13.3% of protein
Raw token
Hpt:5:1.67e-17:97:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ84_RS02055
Histidine kinase, CheA
Roseburia faecis · GCF_020557615
ClassHKTypeCheALength698 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557615#LIZ84_RS02055Stable P2CS identifier used across views.
GenomeGCF_020557615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length698 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage425 / 698 aa (60.9%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa698 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
316-379 aa · 64 aa · 9.2% of protein
Raw token
H-kinase_dim:316:6.93e-16:379:67:673 HATPase_c#3
427-566 aa · 140 aa · 20.1% of protein
Raw token
HATPase_c:427:0.00000000000000109:566:140:1094 CheW#4
571-698 aa · 128 aa · 18.3% of protein
Raw token
CheW:571:2.93e-30:698:135:138- Raw architecture: Hpt:5:1.67e-17:97:93:84#H-kinase_dim:316:6.93e-16:379:67:67#HATPase_c:427:0.00000000000000109:566:140:109#CheW:571:2.93e-30:698:135:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557615::NZ_JAJCJO010000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span139616-142778Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ84_02070RefSeq proteinWP_022046674.1
Context group ID
GCF_020557615::NZ_JAJCJO010000002.1::G00025Context members
LIZ84_RS02050LIZ84_RS02055
Partner locus tags
LIZ84_RS02050LIZ84_RS02055
Partner old locus tags
LIZ84_02065LIZ84_02070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022046674.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KHR2Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KHR2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ84_RS02055Primary locus identifier stored in the genes table.
Old locus tagLIZ84_02070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJO010000002.1Sequence record reported by the local genomic context database.
Genomic interval140 682-142 778 nt2 097 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span139 616-142 778 ntGCF_020557615::NZ_JAJCJO010000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557615::NZ_JAJCJO010000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJO010000002.1All displayed genes belong to this local TCS context.
Neighborhood span139 616-142 778 nt3 163 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 616 nt142 778 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ84_RS02050GCF_020557615#LIZ84_RS02050
RRCheB
139 616-140 680 nt · Forward (+)
LIZ84_RS02055GCF_020557615#LIZ84_RS02055
HKCheACurrent focus
140 682-142 778 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005845255#FGQ84_RS08115Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0773740
Simplified PFAM architecture for HKOC_0773740
PFAM domain coverage: 500 / 698 aa (71.6%)
1 aa698 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[5-97] | P2[182-257] | H-kinase_dim[315-379] | HATPase_c[428-566] | CheW[571-697]
- Domain count: 5
- Matched identifier: HKOC_0773740
- Positioned domains: Hpt 5-97 ; P2 182-257 ; H-kinase_dim 315-379 ; HATPase_c 428-566 ; CheW 571-697
Cluster members and taxonomy
Representative gene: GCF_005845255#FGQ84_RS08115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_020557615
AssemblyASM2055761v1 · Contighaploid
Genome composition3 609 441 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key