1 Response_reg#1
5-114 aa · 110 aa · 31.1% of protein
Raw token
Response_reg:5:2.98e-22:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ84_RS02050
Response regulator, CheB family
Roseburia faecis · GCF_020557615
ClassRRTypeCheBLength354 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020557615#LIZ84_RS02050Stable P2CS identifier used across views.
GenomeGCF_020557615Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length354 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage293 / 354 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa354 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
165-347 aa · 183 aa · 51.7% of protein
Raw token
CheB_methylest:165:4.83e-79:347:183:177- Raw architecture: Response_reg:5:2.98e-22:114:110:111#CheB_methylest:165:4.83e-79:347:183:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020557615::NZ_JAJCJO010000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span139616-142778Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ84_02065RefSeq proteinWP_138346194.1
Context group ID
GCF_020557615::NZ_JAJCJO010000002.1::G00025Context members
LIZ84_RS02050LIZ84_RS02055
Partner locus tags
LIZ84_RS02050LIZ84_RS02055
Partner old locus tags
LIZ84_02065LIZ84_02070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_138346194.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KKB6Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KKB6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed7 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ84_RS02050Primary locus identifier stored in the genes table.
Old locus tagLIZ84_02065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCJO010000002.1Sequence record reported by the local genomic context database.
Genomic interval139 616-140 680 nt1 065 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span139 616-142 778 ntGCF_020557615::NZ_JAJCJO010000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020557615::NZ_JAJCJO010000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCJO010000002.1All displayed genes belong to this local TCS context.
Neighborhood span139 616-142 778 nt3 163 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 616 nt142 778 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ84_RS02050GCF_020557615#LIZ84_RS02050
RRCheBCurrent focus
139 616-140 680 nt · Forward (+)
LIZ84_RS02055GCF_020557615#LIZ84_RS02055
HKCheA
140 682-142 778 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005845255#FGQ84_RS08120Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0471736
Simplified PFAM architecture for RROC_0471736
PFAM domain coverage: 291 / 354 aa (82.2%)
1 aa354 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[5-112] | CheB_methylest[165-347]
- Domain count: 2
- Matched identifier: RROC_0471736
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; CheB_methylest 165-347 ; CheB_methylest 165-347
Cluster members and taxonomy
Representative gene: GCF_005845255#FGQ84_RS08120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_020557615
AssemblyASM2055761v1 · Contighaploid
Genome composition3 609 441 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key