1 HAMP#1
269-338 aa · 70 aa · 12.6% of protein
Raw token
HAMP:269:0.00000166:338:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ62_RS11030
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020554765
ClassHKTypeClassicLength555 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020554765#LIZ62_RS11030Stable P2CS identifier used across views.
GenomeGCF_020554765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length555 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 555 aa (44.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa555 aa
Domain-by-domain annotation3 items
2 His_kinase#2
353-424 aa · 72 aa · 13.0% of protein
Raw token
His_kinase:353:1.45e-23:424:75:803 HATPase_c#3
444-550 aa · 107 aa · 19.3% of protein
Raw token
HATPase_c:444:0.00000000000333:550:115:109- Raw architecture: HAMP:269:0.00000166:338:70:69#His_kinase:353:1.45e-23:424:75:80#HATPase_c:444:0.00000000000333:550:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020554765::NZ_JAJCHX010000015.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12402-14862Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ62_11030RefSeq proteinWP_178735222.1
Context group ID
GCF_020554765::NZ_JAJCHX010000015.1::G00010Context members
LIZ62_RS11025LIZ62_RS11030
Partner locus tags
LIZ62_RS11025LIZ62_RS11030
Partner old locus tags
LIZ62_11025LIZ62_11030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_178735222.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ62_RS11030Primary locus identifier stored in the genes table.
Old locus tagLIZ62_11030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCHX010000015.1Sequence record reported by the local genomic context database.
Genomic interval13 195-14 862 nt1 668 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 402-14 862 ntGCF_020554765::NZ_JAJCHX010000015.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020554765::NZ_JAJCHX010000015.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCHX010000015.1All displayed genes belong to this local TCS context.
Neighborhood span12 402-14 862 nt2 461 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 402 nt14 862 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ62_RS11025GCF_020554765#LIZ62_RS11025
RRunclassified
12 402-13 112 nt · Reverse (-)
LIZ62_RS11030GCF_020554765#LIZ62_RS11030
HKClassicCurrent focus
13 195-14 862 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020554765#LIZ62_RS11030The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1279118
Simplified PFAM architecture for HKOC_1279118
PFAM domain coverage: 158 / 555 aa (28.5%)
1 aa555 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[353-425] | HATPase_c[446-530]
- Domain count: 2
- Matched identifier: HKOC_1279118
- Positioned domains: His_kinase 353-425 ; HATPase_c 446-530
Cluster members and taxonomy
Representative gene: GCF_020554765#LIZ62_RS11030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020554765
AssemblyASM2055476v1 · Contighaploid
Genome composition3 777 977 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 90 · HK 44 · RR 44CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key