1 Response_reg#1
4-65 aa · 62 aa · 32.8% of protein
Raw token
Response_reg:4:0.0000000000000065:65:62:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ62_RS09910
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_020554765
ClassRRTypeunclassifiedLength189 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020554765#LIZ62_RS09910Stable P2CS identifier used across views.
GenomeGCF_020554765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length189 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage62 / 189 aa (32.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa189 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.0000000000000065:65:62:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020554765::NZ_JAJCHX010000012.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span34472-35041Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ62_09905RefSeq proteinWP_227094054.1
Context group ID
GCF_020554765::NZ_JAJCHX010000012.1::G00005Context members
LIZ62_RS09910
Partner locus tags
LIZ62_RS09910
Partner old locus tags
LIZ62_09905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227094054.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ62_RS09910Primary locus identifier stored in the genes table.
Old locus tagLIZ62_09905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCHX010000012.1Sequence record reported by the local genomic context database.
Genomic interval34 472-35 041 nt570 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span34 472-35 041 ntGCF_020554765::NZ_JAJCHX010000012.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020554765::NZ_JAJCHX010000012.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCHX010000012.1All displayed genes belong to this local TCS context.
Neighborhood span34 472-35 041 nt570 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 472 nt35 041 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIZ62_RS09910GCF_020554765#LIZ62_RS09910
RRunclassifiedCurrent focus
34 472-35 041 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020554765#LIZ62_RS09910The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2172725
Simplified PFAM architecture for RROC_2172725
PFAM domain coverage: 64 / 189 aa (33.9%)
1 aa189 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-67]
- Domain count: 1
- Matched identifier: RROC_2172725
- Positioned domains: Response_reg 4-67
Cluster members and taxonomy
Representative gene: GCF_020554765#LIZ62_RS09910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020554765
AssemblyASM2055476v1 · Contighaploid
Genome composition3 777 977 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 90 · HK 44 · RR 44CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key