1 Response_reg#1
4-116 aa · 113 aa · 21.5% of protein
Raw token
Response_reg:4:9.59e-27:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ62_RS05040
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_020554765
ClassRRTypeunclassifiedLength526 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020554765#LIZ62_RS05040Stable P2CS identifier used across views.
GenomeGCF_020554765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length526 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 526 aa (28.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa526 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
488-524 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:488:0.00000000344:524:37:42- Raw architecture: Response_reg:4:9.59e-27:116:113:111#HTH_AraC:488:0.00000000344:524:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020554765::NZ_JAJCHX010000003.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span203273-206604Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ62_05040RefSeq proteinWP_227093761.1
Context group ID
GCF_020554765::NZ_JAJCHX010000003.1::G00040Context members
LIZ62_RS05035LIZ62_RS05040
Partner locus tags
LIZ62_RS05035LIZ62_RS05040
Partner old locus tags
LIZ62_05035LIZ62_05040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227093761.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ62_RS05040Primary locus identifier stored in the genes table.
Old locus tagLIZ62_05040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCHX010000003.1Sequence record reported by the local genomic context database.
Genomic interval205 024-206 604 nt1 581 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span203 273-206 604 ntGCF_020554765::NZ_JAJCHX010000003.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020554765::NZ_JAJCHX010000003.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCHX010000003.1All displayed genes belong to this local TCS context.
Neighborhood span203 273-206 604 nt3 332 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
203 273 nt206 604 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ62_RS05035GCF_020554765#LIZ62_RS05035
HKClassic
203 273-204 988 nt · Forward (+)
LIZ62_RS05040GCF_020554765#LIZ62_RS05040
RRunclassifiedCurrent focus
205 024-206 604 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020554765#LIZ62_RS05040The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0118302
Simplified PFAM architecture for RROC_0118302
PFAM domain coverage: 190 / 526 aa (36.1%)
1 aa526 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[448-525]
- Domain count: 2
- Matched identifier: RROC_0118302
- Positioned domains: Response_reg 4-115 ; HTH_18 448-525
Cluster members and taxonomy
Representative gene: GCF_020554765#LIZ62_RS05040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020554765
AssemblyASM2055476v1 · Contighaploid
Genome composition3 777 977 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 90 · HK 44 · RR 44CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key