1 Response_reg#1
2-114 aa · 113 aa · 50.7% of protein
Raw token
Response_reg:2:1.16e-32:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ62_RS03320
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_020554765
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020554765#LIZ62_RS03320Stable P2CS identifier used across views.
GenomeGCF_020554765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 223 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:3.24e-35:221:77:77- Raw architecture: Response_reg:2:1.16e-32:114:113:111#Trans_reg_C:148:3.24e-35:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020554765::NZ_JAJCHX010000002.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span209962-212301Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ62_03320RefSeq proteinWP_055227976.1
Context group ID
GCF_020554765::NZ_JAJCHX010000002.1::G00027Context members
LIZ62_RS03315LIZ62_RS03320
Partner locus tags
LIZ62_RS03315LIZ62_RS03320
Partner old locus tags
LIZ62_03315LIZ62_03320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055227976.1Primary protein accession used for annex mappings.
UniProt accessionA0A174FBQ1Primary UniProt accession resolved in the annex database.
UniProt IDA0A174FBQ1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ62_RS03320Primary locus identifier stored in the genes table.
Old locus tagLIZ62_03320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCHX010000002.1Sequence record reported by the local genomic context database.
Genomic interval211 630-212 301 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span209 962-212 301 ntGCF_020554765::NZ_JAJCHX010000002.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020554765::NZ_JAJCHX010000002.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCHX010000002.1All displayed genes belong to this local TCS context.
Neighborhood span209 962-212 301 nt2 340 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
209 962 nt212 301 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ62_RS03315GCF_020554765#LIZ62_RS03315
HKClassic
209 962-211 620 nt · Reverse (-)
LIZ62_RS03320GCF_020554765#LIZ62_RS03320
RROmpRCurrent focus
211 630-212 301 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS10195Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1593200
Simplified PFAM architecture for RROC_1593200
PFAM domain coverage: 186 / 223 aa (83.4%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-113] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1593200
- Positioned domains: Response_reg 2-113 ; Response_reg 2-113 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS10195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020554765
AssemblyASM2055476v1 · Contighaploid
Genome composition3 777 977 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 90 · HK 44 · RR 44CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key