1 HAMP#1
174-241 aa · 68 aa · 14.4% of protein
Raw token
HAMP:174:0.0000000000789:241:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIZ62_RS03150
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020554765
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020554765#LIZ62_RS03150Stable P2CS identifier used across views.
GenomeGCF_020554765Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 472 aa (50.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-310 aa · 65 aa · 13.8% of protein
Raw token
HisKA:246:5e-16:310:65:643 HATPase_c#3
362-465 aa · 104 aa · 22.0% of protein
Raw token
HATPase_c:362:2.87e-28:465:104:109- Raw architecture: HAMP:174:0.0000000000789:241:68:69#HisKA:246:5e-16:310:65:64#HATPase_c:362:2.87e-28:465:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020554765::NZ_JAJCHX010000002.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span170373-172495Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIZ62_03150RefSeq proteinWP_173815172.1
Context group ID
GCF_020554765::NZ_JAJCHX010000002.1::G00024Context members
LIZ62_RS03145LIZ62_RS03150
Partner locus tags
LIZ62_RS03145LIZ62_RS03150
Partner old locus tags
LIZ62_03145LIZ62_03150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173815172.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2G9W8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2G9W8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIZ62_RS03150Primary locus identifier stored in the genes table.
Old locus tagLIZ62_03150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJCHX010000002.1Sequence record reported by the local genomic context database.
Genomic interval171 077-172 495 nt1 419 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span170 373-172 495 ntGCF_020554765::NZ_JAJCHX010000002.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020554765::NZ_JAJCHX010000002.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJCHX010000002.1All displayed genes belong to this local TCS context.
Neighborhood span170 373-172 495 nt2 123 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 373 nt172 495 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIZ62_RS03145GCF_020554765#LIZ62_RS03145
RROmpR
170 373-171 077 nt · Forward (+)
LIZ62_RS03150GCF_020554765#LIZ62_RS03150
HKClassicCurrent focus
171 077-172 495 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS02380Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1700352
Simplified PFAM architecture for HKOC_1700352
PFAM domain coverage: 216 / 472 aa (45.8%)
1 aa472 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[196-240] | HisKA[246-310] | HATPase_c[361-466]
- Domain count: 3
- Matched identifier: HKOC_1700352
- Positioned domains: HAMP 196-240 ; HisKA 246-310 ; HATPase_c 361-466
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS02380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020554765
AssemblyASM2055476v1 · Contighaploid
Genome composition3 777 977 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 90 · HK 44 · RR 44CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key