1 Response_reg#1
57-114 aa · 58 aa · 24.8% of protein
Raw token
Response_reg:57:0.000000000193:114:58:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KYE74_RS00250
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_020541885
ClassRRTypeNarLLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020541885#KYE74_RS00250Stable P2CS identifier used across views.
GenomeGCF_020541885Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage115 / 234 aa (49.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-224 aa · 57 aa · 24.4% of protein
Raw token
HTH_LUXR:168:0.0000000000000132:224:57:58- Raw architecture: Response_reg:57:0.000000000193:114:58:111#HTH_LUXR:168:0.0000000000000132:224:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020541885::NZ_CP079233.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span58759-59463Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKYE74_00250RefSeq proteinWP_065439644.1
Context group ID
GCF_020541885::NZ_CP079233.1::G00002Context members
KYE74_RS00250
Partner locus tags
KYE74_RS00250
Partner old locus tags
KYE74_00250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065439644.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKYE74_RS00250Primary locus identifier stored in the genes table.
Old locus tagKYE74_00250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP079233.1Sequence record reported by the local genomic context database.
Genomic interval58 759-59 463 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span58 759-59 463 ntGCF_020541885::NZ_CP079233.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020541885::NZ_CP079233.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP079233.1All displayed genes belong to this local TCS context.
Neighborhood span58 759-59 463 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 759 nt59 463 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KYE74_RS00250GCF_020541885#KYE74_RS00250
RRNarLCurrent focus
58 759-59 463 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001686005#BAD10_RS01105Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1052211
Simplified PFAM architecture for RROC_1052211
PFAM domain coverage: 158 / 234 aa (67.5%)
1 aa234 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[13-116] | GerE[170-223]
- Domain count: 2
- Matched identifier: RROC_1052211
- Positioned domains: Response_reg 13-116 ; Response_reg 13-116 ; GerE 170-223 ; GerE 170-223
Cluster members and taxonomy
Representative gene: GCF_001686005#BAD10_RS01105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_020541885
AssemblyASM2054188v1 · Complete Genomehaploid
Genome composition2 245 999 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 24 · HK 10 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key