1 HisKA#1
83-145 aa · 63 aa · 21.0% of protein
Raw token
HisKA:83:0.000000000108:145:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ92_RS00165
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020539045
ClassHKTypeClassicLength300 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020539045#LIQ92_RS00165Stable P2CS identifier used across views.
GenomeGCF_020539045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length300 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 300 aa (56.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa300 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-296 aa · 105 aa · 35.0% of protein
Raw token
HATPase_c:192:4.83e-19:296:107:109- Raw architecture: HisKA:83:0.000000000108:145:63:64#HATPase_c:192:4.83e-19:296:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020539045::NZ_JAJBPO010000001.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span26999-27901Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ92_00165RefSeq proteinWP_002570969.1
Context group ID
GCF_020539045::NZ_JAJBPO010000001.1::G00001Context members
LIQ92_RS00165
Partner locus tags
LIQ92_RS00165
Partner old locus tags
LIQ92_00165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002570969.1Primary protein accession used for annex mappings.
UniProt accessionR0AEU0Primary UniProt accession resolved in the annex database.
UniProt IDR0AEU0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ92_RS00165Primary locus identifier stored in the genes table.
Old locus tagLIQ92_00165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPO010000001.1Sequence record reported by the local genomic context database.
Genomic interval26 999-27 901 nt903 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 999-27 901 ntGCF_020539045::NZ_JAJBPO010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020539045::NZ_JAJBPO010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPO010000001.1All displayed genes belong to this local TCS context.
Neighborhood span26 999-27 901 nt903 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 999 nt27 901 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ92_RS00165GCF_020539045#LIQ92_RS00165
HKClassicCurrent focus
26 999-27 901 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371645#HMPREF1097_RS07080Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2886835
Simplified PFAM architecture for HKOC_2886835
PFAM domain coverage: 153 / 300 aa (51.0%)
1 aa300 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-145] | HATPase_c[192-283]
- Domain count: 2
- Matched identifier: HKOC_2886835
- Positioned domains: HisKA 85-145 ; HATPase_c 192-283
Cluster members and taxonomy
Representative gene: GCF_000371645#HMPREF1097_RS07080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020539045
AssemblyASM2053904v1 · Contighaploid
Genome composition3 732 741 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 105 · HK 52 · RR 49CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key