1 Response_reg#1
3-84 aa · 82 aa · 83.7% of protein
Raw token
Response_reg:3:8.48e-21:84:82:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIR08_RS13545
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_020538985
ClassRRTypeCheYLength98 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538985#LIR08_RS13545Stable P2CS identifier used across views.
GenomeGCF_020538985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length98 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage82 / 98 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa98 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:8.48e-21:84:82:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538985::NZ_JAJBPN010000021.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15632-18134Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIR08_13560RefSeq proteinWP_243856011.1
Context group ID
GCF_020538985::NZ_JAJBPN010000021.1::G00031Context members
LIR08_RS13540LIR08_RS13545
Partner locus tags
LIR08_RS13540LIR08_RS13545
Partner old locus tags
LIR08_13555LIR08_13560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243856011.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIR08_RS13545Primary locus identifier stored in the genes table.
Old locus tagLIR08_13560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPN010000021.1Sequence record reported by the local genomic context database.
Genomic interval17 838-18 134 nt297 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 632-18 134 ntGCF_020538985::NZ_JAJBPN010000021.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538985::NZ_JAJBPN010000021.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPN010000021.1All displayed genes belong to this local TCS context.
Neighborhood span15 632-18 134 nt2 503 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 632 nt18 134 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIR08_RS13540GCF_020538985#LIR08_RS13540
HKHybrid
15 632-17 806 nt · Reverse (-)
LIR08_RS13545GCF_020538985#LIR08_RS13545
RRCheYCurrent focus
17 838-18 134 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS17200Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2472256
Simplified PFAM architecture for RROC_2472256
PFAM domain coverage: 81 / 98 aa (82.7%)
1 aa98 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-83]
- Domain count: 1
- Matched identifier: RROC_2472256
- Positioned domains: Response_reg 3-83
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS17200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538985
AssemblyASM2053898v1 · Contighaploid
Genome composition3 731 215 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 109 · HK 53 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key