1 Response_reg#1
12-120 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:12:1.97e-30:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIR08_RS10175
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_020538985
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538985#LIR08_RS10175Stable P2CS identifier used across views.
GenomeGCF_020538985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 233 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-229 aa · 74 aa · 31.8% of protein
Raw token
Trans_reg_C:156:1.69e-28:229:74:77- Raw architecture: Response_reg:12:1.97e-30:120:110:111#Trans_reg_C:156:1.69e-28:229:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538985::NZ_JAJBPN010000012.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span90721-92791Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIR08_10190RefSeq proteinWP_173815513.1
Context group ID
GCF_020538985::NZ_JAJBPN010000012.1::G00016Context members
LIR08_RS10175LIR08_RS10180
Partner locus tags
LIR08_RS10175LIR08_RS10180
Partner old locus tags
LIR08_10190LIR08_10195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815513.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIR08_RS10175Primary locus identifier stored in the genes table.
Old locus tagLIR08_10190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPN010000012.1Sequence record reported by the local genomic context database.
Genomic interval90 721-91 422 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span90 721-92 791 ntGCF_020538985::NZ_JAJBPN010000012.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538985::NZ_JAJBPN010000012.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPN010000012.1All displayed genes belong to this local TCS context.
Neighborhood span90 721-92 791 nt2 071 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
90 721 nt92 791 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIR08_RS10175GCF_020538985#LIR08_RS10175
RROmpRCurrent focus
90 721-91 422 nt · Forward (+)
LIR08_RS10180GCF_020538985#LIR08_RS10180
HKClassic
91 427-92 791 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS14555Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1095359
Simplified PFAM architecture for RROC_1095359
PFAM domain coverage: 183 / 233 aa (78.5%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-229]
- Domain count: 2
- Matched identifier: RROC_1095359
- Positioned domains: Response_reg 12-120 ; Trans_reg_C 156-229
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS14555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538985
AssemblyASM2053898v1 · Contighaploid
Genome composition3 731 215 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 109 · HK 53 · RR 52CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key