1 HAMP#1
285-351 aa · 67 aa · 11.8% of protein
Raw token
HAMP:285:0.0000000773:351:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS15410
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020538965
ClassHKTypeClassicLength569 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538965#LIQ80_RS15410Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length569 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 569 aa (44.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa569 aa
Domain-by-domain annotation3 items
2 His_kinase#2
366-445 aa · 80 aa · 14.1% of protein
Raw token
His_kinase:366:1.74e-28:445:80:803 HATPase_c#3
456-561 aa · 106 aa · 18.6% of protein
Raw token
HATPase_c:456:6.07e-16:561:115:109- Raw architecture: HAMP:285:0.0000000773:351:67:69#His_kinase:366:1.74e-28:445:80:80#HATPase_c:456:6.07e-16:561:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538965::NZ_JAJBPK010000029.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4064-7295Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_15420RefSeq proteinWP_118720653.1
Context group ID
GCF_020538965::NZ_JAJBPK010000029.1::G00038Context members
LIQ80_RS15410LIQ80_RS15415
Partner locus tags
LIQ80_RS15410LIQ80_RS15415
Partner old locus tags
LIQ80_15420LIQ80_15425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118720653.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS15410Primary locus identifier stored in the genes table.
Old locus tagLIQ80_15420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000029.1Sequence record reported by the local genomic context database.
Genomic interval4 064-5 773 nt1 710 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 064-7 295 ntGCF_020538965::NZ_JAJBPK010000029.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000029.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000029.1All displayed genes belong to this local TCS context.
Neighborhood span4 064-7 295 nt3 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 064 nt7 295 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ80_RS15410GCF_020538965#LIQ80_RS15410
HKClassicCurrent focus
4 064-5 773 nt · Reverse (-)
LIQ80_RS15415GCF_020538965#LIQ80_RS15415
RRunclassified
5 736-7 295 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479665#DWW13_RS16975Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1217554
Simplified PFAM architecture for HKOC_1217554
PFAM domain coverage: 179 / 569 aa (31.5%)
1 aa569 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[367-443] | HATPase_c[462-563]
- Domain count: 2
- Matched identifier: HKOC_1217554
- Positioned domains: His_kinase 367-443 ; HATPase_c 462-563
Cluster members and taxonomy
Representative gene: GCF_003479665#DWW13_RS16975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key