1 GAF#1
35-175 aa · 141 aa · 19.5% of protein
Raw token
GAF:35:0.00000000143:175:141:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS13860
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_020538965
ClassHKTypeHybridLength724 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538965#LIQ80_RS13860Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
GAFHisKAHATPase_cResponse_reg
Protein length724 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage443 / 724 aa (61.2%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa724 aa
Domain-by-domain annotation4 items
2 HisKA#2
343-409 aa · 67 aa · 9.3% of protein
Raw token
HisKA:343:9.43e-16:409:67:643 HATPase_c#3
458-575 aa · 118 aa · 16.3% of protein
Raw token
HATPase_c:458:2.15e-27:575:118:1094 Response_reg#4
600-716 aa · 117 aa · 16.2% of protein
Raw token
Response_reg:600:1.55e-31:716:117:111- Raw architecture: GAF:35:0.00000000143:175:141:133#HisKA:343:9.43e-16:409:67:64#HATPase_c:458:2.15e-27:575:118:109#Response_reg:600:1.55e-31:716:117:111
- Domain description: 1 GAF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538965::NZ_JAJBPK010000020.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15632-18134Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_13870RefSeq proteinWP_173815370.1
Context group ID
GCF_020538965::NZ_JAJBPK010000020.1::G00033Context members
LIQ80_RS13860LIQ80_RS13865
Partner locus tags
LIQ80_RS13860LIQ80_RS13865
Partner old locus tags
LIQ80_13870LIQ80_13875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815370.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS13860Primary locus identifier stored in the genes table.
Old locus tagLIQ80_13870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000020.1Sequence record reported by the local genomic context database.
Genomic interval15 632-17 806 nt2 175 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 632-18 134 ntGCF_020538965::NZ_JAJBPK010000020.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000020.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000020.1All displayed genes belong to this local TCS context.
Neighborhood span15 632-18 134 nt2 503 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 632 nt18 134 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ80_RS13860GCF_020538965#LIQ80_RS13860
HKHybridCurrent focus
15 632-17 806 nt · Reverse (-)
LIQ80_RS13865GCF_020538965#LIQ80_RS13865
RRCheY
17 838-18 134 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS09535Use this link to inspect the representative gene detail.
PFAM architectureGAF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0725324
Simplified PFAM architecture for HKOC_0725324
PFAM domain coverage: 436 / 724 aa (60.2%)
1 aa724 aa
GAFHisKAHATPase_cResponse_reg
- Simplified architecture: GAF + HisKA + HATPase_c + Response_reg
- Raw architecture: GAF[35-171] | HisKA[344-409] | HATPase_c[459-574] | Response_reg[600-716]
- Domain count: 4
- Matched identifier: HKOC_0725324
- Positioned domains: GAF 35-171 ; HisKA 344-409 ; HATPase_c 459-574 ; Response_reg 600-716
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS09535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key