1 Response_reg#1
6-93 aa · 88 aa · 87.1% of protein
Raw token
Response_reg:6:2.53e-24:93:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS13845
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_020538965
ClassRRTypeCheYLength101 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538965#LIQ80_RS13845Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length101 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage88 / 101 aa (87.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa101 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:2.53e-24:93:88:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538965::NZ_JAJBPK010000020.1::G00032
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14307-14612Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_13855RefSeq proteinWP_055228394.1
Context group ID
GCF_020538965::NZ_JAJBPK010000020.1::G00032Context members
LIQ80_RS13845
Partner locus tags
LIQ80_RS13845
Partner old locus tags
LIQ80_13855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055228394.1Primary protein accession used for annex mappings.
UniProt accessionA0A174PVY3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174PVY3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS13845Primary locus identifier stored in the genes table.
Old locus tagLIQ80_13855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000020.1Sequence record reported by the local genomic context database.
Genomic interval14 307-14 612 nt306 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 307-14 612 ntGCF_020538965::NZ_JAJBPK010000020.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000020.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000020.1All displayed genes belong to this local TCS context.
Neighborhood span14 307-14 612 nt306 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 307 nt14 612 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ80_RS13845GCF_020538965#LIQ80_RS13845
RRCheYCurrent focus
14 307-14 612 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS13480Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2471472
Simplified PFAM architecture for RROC_2471472
PFAM domain coverage: 90 / 101 aa (89.1%)
1 aa101 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-93]
- Domain count: 1
- Matched identifier: RROC_2471472
- Positioned domains: Response_reg 4-93 ; Response_reg 4-93
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS13480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key