1 HAMP#1
186-254 aa · 69 aa · 13.9% of protein
Raw token
HAMP:186:0.000000000000119:254:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS12680
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020538965
ClassHKTypeClassicLength497 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538965#LIQ80_RS12680Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length497 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 497 aa (50.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa497 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-332 aa · 68 aa · 13.7% of protein
Raw token
HisKA:265:0.00000000000000157:332:68:643 HATPase_c#3
379-492 aa · 114 aa · 22.9% of protein
Raw token
HATPase_c:379:3.5e-32:492:114:109- Raw architecture: HAMP:186:0.000000000000119:254:69:69#HisKA:265:0.00000000000000157:332:68:64#HATPase_c:379:3.5e-32:492:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538965::NZ_JAJBPK010000016.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45068-47247Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_12690RefSeq proteinWP_055267274.1
Context group ID
GCF_020538965::NZ_JAJBPK010000016.1::G00027Context members
LIQ80_RS12675LIQ80_RS12680
Partner locus tags
LIQ80_RS12675LIQ80_RS12680
Partner old locus tags
LIQ80_12685LIQ80_12690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055267274.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS12680Primary locus identifier stored in the genes table.
Old locus tagLIQ80_12690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000016.1Sequence record reported by the local genomic context database.
Genomic interval45 754-47 247 nt1 494 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 068-47 247 ntGCF_020538965::NZ_JAJBPK010000016.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000016.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000016.1All displayed genes belong to this local TCS context.
Neighborhood span45 068-47 247 nt2 180 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 068 nt47 247 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ80_RS12675GCF_020538965#LIQ80_RS12675
RROmpR
45 068-45 757 nt · Reverse (-)
LIQ80_RS12680GCF_020538965#LIQ80_RS12680
HKClassicCurrent focus
45 754-47 247 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS11645Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1493426
Simplified PFAM architecture for HKOC_1493426
PFAM domain coverage: 229 / 497 aa (46.1%)
1 aa497 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[202-254] | HisKA[267-331] | HATPase_c[380-490]
- Domain count: 3
- Matched identifier: HKOC_1493426
- Positioned domains: HAMP 202-254 ; HisKA 267-331 ; HATPase_c 380-490
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS11645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key