1 HisKA#1
89-148 aa · 60 aa · 20.0% of protein
Raw token
HisKA:89:0.000000000000196:148:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS08080
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020538965
ClassHKTypeClassicLength300 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538965#LIQ80_RS08080Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length300 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 300 aa (48.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa300 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-284 aa · 85 aa · 28.3% of protein
Raw token
HATPase_c:200:0.000000000000798:284:89:109- Raw architecture: HisKA:89:0.000000000000196:148:60:64#HATPase_c:200:0.000000000000798:284:89:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538965::NZ_JAJBPK010000007.1::G00063
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span128181-129083Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_08090RefSeq proteinWP_055267777.1
Context group ID
GCF_020538965::NZ_JAJBPK010000007.1::G00063Context members
LIQ80_RS08080
Partner locus tags
LIQ80_RS08080
Partner old locus tags
LIQ80_08090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055267777.1Primary protein accession used for annex mappings.
UniProt accessionA0A174R9V3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174R9V3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS08080Primary locus identifier stored in the genes table.
Old locus tagLIQ80_08090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000007.1Sequence record reported by the local genomic context database.
Genomic interval128 181-129 083 nt903 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span128 181-129 083 ntGCF_020538965::NZ_JAJBPK010000007.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000007.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000007.1All displayed genes belong to this local TCS context.
Neighborhood span128 181-129 083 nt903 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
128 181 nt129 083 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ80_RS08080GCF_020538965#LIQ80_RS08080
HKClassicCurrent focus
128 181-129 083 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS14220Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2886891
Simplified PFAM architecture for HKOC_2886891
PFAM domain coverage: 151 / 300 aa (50.3%)
1 aa300 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-148] | HATPase_c[200-287]
- Domain count: 2
- Matched identifier: HKOC_2886891
- Positioned domains: HisKA 86-148 ; HATPase_c 200-287
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS14220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key