1 Response_reg#1
4-117 aa · 114 aa · 21.5% of protein
Raw token
Response_reg:4:9.29e-33:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS07585
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_020538965
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538965#LIQ80_RS07585Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage195 / 531 aa (36.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
434-475 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:434:0.000000789:475:42:423 HTH_AraC#3
487-525 aa · 39 aa · 7.3% of protein
Raw token
HTH_AraC:487:0.0000402:525:39:42- Raw architecture: Response_reg:4:9.29e-33:117:114:111#HTH_AraC:434:0.000000789:475:42:42#HTH_AraC:487:0.0000402:525:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538965::NZ_JAJBPK010000007.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17119-20493Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_07595RefSeq proteinWP_118595815.1
Context group ID
GCF_020538965::NZ_JAJBPK010000007.1::G00060Context members
LIQ80_RS07585LIQ80_RS07590
Partner locus tags
LIQ80_RS07585LIQ80_RS07590
Partner old locus tags
LIQ80_07595LIQ80_07600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118595815.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2GFN9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2GFN9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS07585Primary locus identifier stored in the genes table.
Old locus tagLIQ80_07595Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000007.1Sequence record reported by the local genomic context database.
Genomic interval17 119-18 714 nt1 596 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 119-20 493 ntGCF_020538965::NZ_JAJBPK010000007.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000007.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000007.1All displayed genes belong to this local TCS context.
Neighborhood span17 119-20 493 nt3 375 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 119 nt20 493 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ80_RS07585GCF_020538965#LIQ80_RS07585
RRunclassifiedCurrent focus
17 119-18 714 nt · Reverse (-)
LIQ80_RS07590GCF_020538965#LIQ80_RS07590
HKClassic
18 736-20 493 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479155#DWX26_RS08875Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0110047
Simplified PFAM architecture for RROC_0110047
PFAM domain coverage: 193 / 531 aa (36.3%)
1 aa531 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[448-526]
- Domain count: 2
- Matched identifier: RROC_0110047
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 448-526 ; HTH_18 448-526
Cluster members and taxonomy
Representative gene: GCF_003479155#DWX26_RS08875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key