1 Response_reg#1
6-114 aa · 109 aa · 20.5% of protein
Raw token
Response_reg:6:3.71e-26:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS07140
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_020538965
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538965#LIQ80_RS07140Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage172 / 532 aa (32.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
446-479 aa · 34 aa · 6.4% of protein
Raw token
HTH_AraC:446:0.00000000592:479:34:423 HTH_AraC#3
500-528 aa · 29 aa · 5.5% of protein
Raw token
HTH_AraC:500:0.000000376:528:29:42- Raw architecture: Response_reg:6:3.71e-26:114:109:111#HTH_AraC:446:0.00000000592:479:34:42#HTH_AraC:500:0.000000376:528:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538965::NZ_JAJBPK010000006.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65291-68748Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_07150RefSeq proteinWP_173815421.1
Context group ID
GCF_020538965::NZ_JAJBPK010000006.1::G00057Context members
LIQ80_RS07135LIQ80_RS07140
Partner locus tags
LIQ80_RS07135LIQ80_RS07140
Partner old locus tags
LIQ80_07145LIQ80_07150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815421.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS07140Primary locus identifier stored in the genes table.
Old locus tagLIQ80_07150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000006.1Sequence record reported by the local genomic context database.
Genomic interval67 150-68 748 nt1 599 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span65 291-68 748 ntGCF_020538965::NZ_JAJBPK010000006.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000006.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000006.1All displayed genes belong to this local TCS context.
Neighborhood span65 291-68 748 nt3 458 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 291 nt68 748 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ80_RS07135GCF_020538965#LIQ80_RS07135
HKClassic
65 291-67 126 nt · Reverse (-)
LIQ80_RS07140GCF_020538965#LIQ80_RS07140
RRunclassifiedCurrent focus
67 150-68 748 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300255#G4443_RS12060Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0108516
Simplified PFAM architecture for RROC_0108516
PFAM domain coverage: 316 / 532 aa (59.4%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-117] | GGDEF_2[166-291] | HTH_18[452-529]
- Domain count: 3
- Matched identifier: RROC_0108516
- Positioned domains: Response_reg 6-117 ; GGDEF_2 166-291 ; HTH_18 452-529
Cluster members and taxonomy
Representative gene: GCF_013300255#G4443_RS12060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key