1 dCache_1#1
141-285 aa · 145 aa · 23.7% of protein
Raw token
dCache_1:141:0.0000000000313:285:149:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS07135
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_020538965
ClassHKTypeClassicLength611 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538965#LIQ80_RS07135Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length611 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage333 / 611 aa (54.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa611 aa
Domain-by-domain annotation3 items
2 His_kinase#2
385-464 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:385:7.27e-34:464:80:803 HATPase_c#3
480-587 aa · 108 aa · 17.7% of protein
Raw token
HATPase_c:480:8.05e-17:587:111:109- Raw architecture: dCache_1:141:0.0000000000313:285:149:195#His_kinase:385:7.27e-34:464:80:80#HATPase_c:480:8.05e-17:587:111:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538965::NZ_JAJBPK010000006.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65291-68748Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_07145RefSeq proteinWP_173815422.1
Context group ID
GCF_020538965::NZ_JAJBPK010000006.1::G00057Context members
LIQ80_RS07135LIQ80_RS07140
Partner locus tags
LIQ80_RS07135LIQ80_RS07140
Partner old locus tags
LIQ80_07145LIQ80_07150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173815422.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS07135Primary locus identifier stored in the genes table.
Old locus tagLIQ80_07145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000006.1Sequence record reported by the local genomic context database.
Genomic interval65 291-67 126 nt1 836 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span65 291-68 748 ntGCF_020538965::NZ_JAJBPK010000006.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000006.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000006.1All displayed genes belong to this local TCS context.
Neighborhood span65 291-68 748 nt3 458 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 291 nt68 748 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIQ80_RS07135GCF_020538965#LIQ80_RS07135
HKClassicCurrent focus
65 291-67 126 nt · Reverse (-)
LIQ80_RS07140GCF_020538965#LIQ80_RS07140
RRunclassified
67 150-68 748 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300205#G5A95_RS13390Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1002311
Simplified PFAM architecture for HKOC_1002311
PFAM domain coverage: 420 / 611 aa (68.7%)
1 aa611 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[53-284] | His_kinase[385-464] | HATPase_c[481-588]
- Domain count: 3
- Matched identifier: HKOC_1002311
- Positioned domains: dCache_1 53-284 ; His_kinase 385-464 ; HATPase_c 481-588
Cluster members and taxonomy
Representative gene: GCF_013300205#G5A95_RS13390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key