1 GGDEF#1
127-272 aa · 146 aa · 21.8% of protein
Raw token
GGDEF:127:1.7e-34:272:158:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIQ80_RS05265
Response regulator, RpfG family
Fusicatenibacter saccharivorans · GCF_020538965
ClassRRTypeRpfGLength670 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538965#LIQ80_RS05265Stable P2CS identifier used across views.
GenomeGCF_020538965Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length670 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage359 / 670 aa (53.6%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa670 aa
Domain-by-domain annotation3 items
2 Response_reg#2
299-412 aa · 114 aa · 17.0% of protein
Raw token
Response_reg:299:5.97e-26:412:115:1113 HD#3
494-592 aa · 99 aa · 14.8% of protein
Raw token
HD:494:0.000000000000969:592:99:110- Raw architecture: GGDEF:127:1.7e-34:272:158:160#Response_reg:299:5.97e-26:412:115:111#HD:494:0.000000000000969:592:99:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538965::NZ_JAJBPK010000004.1::G00046
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span30519-32597Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIQ80_05275RefSeq proteinWP_330589814.1
Context group ID
GCF_020538965::NZ_JAJBPK010000004.1::G00046Context members
LIQ80_RS05265
Partner locus tags
LIQ80_RS05265
Partner old locus tags
LIQ80_05275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330589814.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIQ80_RS05265Primary locus identifier stored in the genes table.
Old locus tagLIQ80_05275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBPK010000004.1Sequence record reported by the local genomic context database.
Genomic interval30 519-32 597 nt2 079 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 519-32 597 ntGCF_020538965::NZ_JAJBPK010000004.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538965::NZ_JAJBPK010000004.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBPK010000004.1All displayed genes belong to this local TCS context.
Neighborhood span30 519-32 597 nt2 079 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 519 nt32 597 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIQ80_RS05265GCF_020538965#LIQ80_RS05265
RRRpfGCurrent focus
30 519-32 597 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020708865#LK486_RS05900Use this link to inspect the representative gene detail.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0034105
Simplified PFAM architecture for RROC_0034105
PFAM domain coverage: 388 / 671 aa (57.8%)
1 aa671 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[127-271] | Response_reg[299-411] | HD_5[482-611]
- Domain count: 3
- Matched identifier: RROC_0034105
- Positioned domains: GGDEF 127-271 ; Response_reg 299-411 ; HD_5 482-611
Cluster members and taxonomy
Representative gene: GCF_020708865#LK486_RS05900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_020538965
AssemblyASM2053896v1 · Contighaploid
Genome composition3 670 825 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 107 · HK 52 · RR 51CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key